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PI0025702 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025702
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr01:18911699..18912424
RNA-Seq ExpressionPI0025702
SyntenyPI0025702
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]7.0e-5874.85Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG RPSSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTR
        PTTYSQAV  +KRF+PRPEIK+YFQK +V+YDPIIEPEYQSLT++E VSKIF + FNFLPEDL+K +
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]1.0e-5675.15Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRK
        PTTYSQAV P+KRF+PRP+IK YFQK +V+YDP IE EYQSLT++E VSKIF E FNFLPEDLRK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.2e-6578.65Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKFYEFILVDTK
        PTTYSQAV P+KRF+PRPEIK+YFQK +V+YDPIIE EYQSLT +ETVSKIF E FNFL EDLRKTRKFYEFIL DTK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKFYEFILVDTK

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]3.0e-5379.56Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYD
        MSADQYAMDLGFTTVTRS++RSS IRIES TESSTPPRPSANL+RP GG  QMRPPASP SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK +V+YD
Subjt:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYD

Query:  PIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKF
         IIEPEYQS+T+++TVSKIF + FN LPEDLRKTR F
Subjt:  PIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]1.9e-5576.47Show/hide
Query:  RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAP
        R +STSS+G+RPSSS N APSPMSADQYAMDLGFTTVTRS+ARSS I+I SPT+SSTPPR SANL+RPS  + QMRP ASPLSN ESSTPPTTYSQ + P
Subjt:  RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAP

Query:  EKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDL
        +KRF+PR EIK+YFQK V++YD IIEPEYQSLT++ETVSKIF + FNFLP+DL
Subjt:  EKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDL

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein5.8e-6678.65Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKFYEFILVDTK
        PTTYSQAV P+KRF+PRPEIK+YFQK +V+YDPIIE EYQSLT +ETVSKIF E FNFL EDLRKTRKFYEFIL DTK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKFYEFILVDTK

A0A5D3BM67 Uncharacterized protein1.5e-5379.56Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYD
        MSADQYAMDLGFTTVTRS++RSS IRIES TESSTPPRPSANL+RP GG  QMRPPASP SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK +V+YD
Subjt:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYD

Query:  PIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKF
         IIEPEYQS+T+++TVSKIF + FN LPEDLRKTR F
Subjt:  PIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKF

A0A5D3CKX1 Uncharacterized protein7.8e-4777.78Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+RPSSS N APSPMSADQY MDLGFTTV RS++RSS IR ESPTESSTPPRP ANL+RPSG + QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPII
        PTTYSQAV P+KRF+PRP+IK+YFQK +V+YDPII
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPII

A0A5D3E4J4 Uncharacterized protein4.9e-5775.15Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRK
        PTTYSQAV P+KRF+PRP+IK YFQK +V+YDP IE EYQSLT++E VSKIF E FNFLPEDLRK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRK

E5GCE6 Uncharacterized protein3.4e-5874.85Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG RPSSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTR
        PTTYSQAV  +KRF+PRPEIK+YFQK +V+YDPIIEPEYQSLT++E VSKIF + FNFLPEDL+K +
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGAATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAAAATTTTCGCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGAAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGC
CCGATAAAAAAGATGCTTCAAAATTAAAGTCTGTAGATGAGTGTTCCTTTAAATGGTGTCTCCGGGACTTGAACAAAGGGTCTTACCCTTTCTATGGCACGAGAGGGGTT
TTTTTGTTTATTGGTTGGACCATAAACAAGTTGTTCATTAGAGGAGCACTGGTATTTAAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGAATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAAAATTTTCGCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGAAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGC
CCGATAAAAAAGATGCTTCAAAATTAAAGTCTGTAGATGAGTGTTCCTTTAAATGGTGTCTCCGGGACTTGAACAAAGGGTCTTACCCTTTCTATGGCACGAGAGGGGTT
TTTTTGTTTATTGGTTGGACCATAAACAAGTTGTTCATTAGAGGAGCACTGGTATTTAAGGACTAG
Protein sequenceShow/hide protein sequence
MSSVRGRGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEK
RFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFAEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKKDASKLKSVDECSFKWCLRDLNKGSYPFYGTRGV
FLFIGWTINKLFIRGALVFKD