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PI0025707 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025707
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:28693246..28694159
RNA-Seq ExpressionPI0025707
SyntenyPI0025707
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33917.1 hypothetical protein [Cucumis melo subsp. melo]2.1e-4349.75Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        MA+SSR  KH W KE+D  LVECLV+LV+S GW SDNGTF  GY+S L +M+ ++M   NI ATTID  IKTM++ F AISE+RGP+CSGF WNDEL  I
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
        I EKD+FD+W+KGL+MSPD+ M  R  R  + R                                    +WP  + QD SVT+ EVVRQLQ I EL+
Subjt:  IAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-4441.83Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        MA+SSR+PKH WTKEE+  LVECLVELV++GGWRSDNGTFRPGY + L +M+  ++P  NI A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSWVK------------------------------------------------------------------GLDMSPDDIMTPRSVRMSEAR-
        + EK+LFD WVK                                                                  GL+MSPDD+M  R+VR+SE R 
Subjt:  IAEKDLFDSWVK------------------------------------------------------------------GLDMSPDDIMTPRSVRMSEAR-

Query:  ----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
                                           EWP  QRQD S TR E+VRQL+ I EL+
Subjt:  ----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

KAA0047509.1 retrotransposon protein [Cucumis melo var. makuwa]7.2e-4443.93Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        M +SSR+PKH WTKEE+V LVECLVELV++GGWRSDNGTFRPGY + L +M+  ++P  NI A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSW----------------------------------------------------------------VKGLDMSPDDIMTPRSVRMSEAR---
        IAEK++FD W                                                                  GL+MSPDD+M  R+ R    R   
Subjt:  IAEKDLFDSW----------------------------------------------------------------VKGLDMSPDDIMTPRSVRMSEAR---

Query:  ----------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
                   EWP  QRQD + TR E+VRQL+ I EL+
Subjt:  ----------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

KAA0060635.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-4249.24Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        MA+SSR  KH W KE+D  LVECLV+LV+S GW SDNGTF  GY+S L +M+ ++M   NI ATTID  IKTM++ F AISE+RGP+CSGF WNDEL  I
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
        I EKD+FD+W+KGL+MSPD+ M  R  R  + R                                    +W   + QD SVT+ EVVRQLQ I EL+
Subjt:  IAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-4441.44Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        MA+SSR+PKH WTKEE+  LVECLVELV++GGWRSDNGTFRPGY + L +M+  ++P  NI A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSWVK------------------------------------------------------------------GLDMSPDDIMTPRSVRMSEAR-
        + EK+LFD WVK                                                                  GL+MSPDD+M  R+ R+SE R 
Subjt:  IAEKDLFDSWVK------------------------------------------------------------------GLDMSPDDIMTPRSVRMSEAR-

Query:  ----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
                                           EWP  QRQD S TR E+VRQL+ I EL+
Subjt:  ----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

TrEMBL top hitse value%identityAlignment
A0A5A7U098 Retrotransposon protein7.0e-4541.83Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        MA+SSR+PKH WTKEE+  LVECLVELV++GGWRSDNGTFRPGY + L +M+  ++P  NI A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSWVK------------------------------------------------------------------GLDMSPDDIMTPRSVRMSEAR-
        + EK+LFD WVK                                                                  GL+MSPDD+M  R+VR+SE R 
Subjt:  IAEKDLFDSWVK------------------------------------------------------------------GLDMSPDDIMTPRSVRMSEAR-

Query:  ----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
                                           EWP  QRQD S TR E+VRQL+ I EL+
Subjt:  ----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

A0A5A7U216 Retrotransposon protein3.5e-4443.93Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        M +SSR+PKH WTKEE+V LVECLVELV++GGWRSDNGTFRPGY + L +M+  ++P  NI A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSW----------------------------------------------------------------VKGLDMSPDDIMTPRSVRMSEAR---
        IAEK++FD W                                                                  GL+MSPDD+M  R+ R    R   
Subjt:  IAEKDLFDSW----------------------------------------------------------------VKGLDMSPDDIMTPRSVRMSEAR---

Query:  ----------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
                   EWP  QRQD + TR E+VRQL+ I EL+
Subjt:  ----------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

A0A5D3BVH6 Retrotransposon protein1.5e-4249.24Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        MA+SSR  KH W KE+D  LVECLV+LV+S GW SDNGTF  GY+S L +M+ ++M   NI ATTID  IKTM++ F AISE+RGP+CSGF WNDEL  I
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
        I EKD+FD+W+KGL+MSPD+ M  R  R  + R                                    +W   + QD SVT+ EVVRQLQ I EL+
Subjt:  IAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

A0A5D3C1M0 Retrotransposon protein2.0e-4441.44Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        MA+SSR+PKH WTKEE+  LVECLVELV++GGWRSDNGTFRPGY + L +M+  ++P  NI A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSWVK------------------------------------------------------------------GLDMSPDDIMTPRSVRMSEAR-
        + EK+LFD WVK                                                                  GL+MSPDD+M  R+ R+SE R 
Subjt:  IAEKDLFDSWVK------------------------------------------------------------------GLDMSPDDIMTPRSVRMSEAR-

Query:  ----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
                                           EWP  QRQD S TR E+VRQL+ I EL+
Subjt:  ----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

E5GBS5 Uncharacterized protein1.0e-4349.75Show/hide
Query:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI
        MA+SSR  KH W KE+D  LVECLV+LV+S GW SDNGTF  GY+S L +M+ ++M   NI ATTID  IKTM++ F AISE+RGP+CSGF WNDEL  I
Subjt:  MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCI

Query:  IAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS
        I EKD+FD+W+KGL+MSPD+ M  R  R  + R                                    +WP  + QD SVT+ EVVRQLQ I EL+
Subjt:  IAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTSVTRAEVVRQLQGIQELS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACGTCTTCAAGGGTCCCGAAGCACCACTGGACGAAAGAGGAGGATGTCGTCCTTGTTGAATGTCTGGTGGAATTGGTATCTTCCGGCGGGTGGAGGTCGGATAA
CGGGACTTTTAGACCTGGATACCATAGTCATCTACAGAAAATGATTGGCGAGAGGATGCCCAGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGA
AAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGTTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGG
GTGAAGGGCTTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGAATGGCCCAAAGAACAACGACAAGATACAAGCGTGAC
ACGTGCGGAAGTTGTTAGACAGCTACAGGGAATCCAGGAGCTGAGTCGACAACAGGGCTCGTTGTATGGGCATATTGATGCGCAGCGTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACGTCTTCAAGGGTCCCGAAGCACCACTGGACGAAAGAGGAGGATGTCGTCCTTGTTGAATGTCTGGTGGAATTGGTATCTTCCGGCGGGTGGAGGTCGGATAA
CGGGACTTTTAGACCTGGATACCATAGTCATCTACAGAAAATGATTGGCGAGAGGATGCCCAGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGA
AAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGTTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGG
GTGAAGGGCTTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGAATGGCCCAAAGAACAACGACAAGATACAAGCGTGAC
ACGTGCGGAAGTTGTTAGACAGCTACAGGGAATCCAGGAGCTGAGTCGACAACAGGGCTCGTTGTATGGGCATATTGATGCGCAGCGTGGATGA
Protein sequenceShow/hide protein sequence
MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSW
VKGLDMSPDDIMTPRSVRMSEARPEWPKEQRQDTSVTRAEVVRQLQGIQELSRQQGSLYGHIDAQRG