; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0025712 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025712
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr06:25016140..25016801
RNA-Seq ExpressionPI0025712
SyntenyPI0025712
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-4757.93Show/hide
Query:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN
        +RTE +AS+WGI+ +FL   YLG PLG K ++ +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FKAP    KN+EK  R+FLWKN
Subjt:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN

Query:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
             + HL+ W+KIT+ KEKGGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.8e-4858.28Show/hide
Query:  RTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKND
        RTE +AS+WGI+ +FL   YLG PLG K ++ +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FKAP    KN+EK  R+FLWKN 
Subjt:  RTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKND

Query:  NNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
            + HL+ W+KIT+PKE+GGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  NNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-4758.28Show/hide
Query:  RTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKND
        RTE +AS+WGI+ +FL   YLG PLG K  + +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FKAP    KN+EK  R+FLWKN 
Subjt:  RTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKND

Query:  NNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
            + HL+ W+KIT+PKE+GGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  NNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.4e-4757.93Show/hide
Query:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN
        +RTE +AS+WGI+ +FL   YLG PLG K  + +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FKAP    KN+EK  R+FLWKN
Subjt:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN

Query:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
             + HL+ W+KIT+ KEKGGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]5.7e-4757.32Show/hide
Query:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN
        +RTE +AS+WGI+ +FL   YLG PLG K ++ +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FK P    KN+EK  R+FLWKN
Subjt:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN

Query:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
             + HL+ W+KIT+ KEKGGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein2.8e-4757.32Show/hide
Query:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN
        +RTE +AS+WGI+ +FL   YLG PLG K ++ +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FK P    KN+EK  R+FLWKN
Subjt:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN

Query:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
             + HL+ W+KIT+ KEKGGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein3.3e-4858.28Show/hide
Query:  RTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKND
        RTE +AS+WGI+ +FL   YLG PLG K ++ +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FKAP    KN+EK  R+FLWKN 
Subjt:  RTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKND

Query:  NNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
            + HL+ W+KIT+PKE+GGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  NNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein7.3e-4858.28Show/hide
Query:  RTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKND
        RTE +AS+WGI+ +FL   YLG PLG K  + +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FKAP    KN+EK  R+FLWKN 
Subjt:  RTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKND

Query:  NNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
            + HL+ W+KIT+PKE+GGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  NNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein2.1e-4757.93Show/hide
Query:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN
        +RTE +AS+WGI+ +FL   YLG PLG K  + +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FKAP    KN+EK  R+FLWKN
Subjt:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN

Query:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
             + HL+ W+KIT+ KEKGGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein9.6e-4857.93Show/hide
Query:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN
        +RTE +AS+WGI+ +FL   YLG PLG K ++ +F  N+ EKI KKL+SW+YS +SKGGK+TLI SSLASLPTYQL +FKAP    KN+EK  R+FLWKN
Subjt:  NRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKN

Query:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
             + HL+ W+KIT+ KEKGGL IS++ D+NFA + KWLWR+ +E S LWKK+I  N K+ S
Subjt:  DNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWAS
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.3e-1428.91Show/hide
Query:  PLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKNDNNDGQSHLLRWSKITTPKEKGGL
        P+ +K ++      I E++  ++S WR   +S  G++TL  + L+S+P + +     P  +   +++  R FLW +     + HL++WSK+ +PK++GGL
Subjt:  PLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLRDFLWKNDNNDGQSHLLRWSKITTPKEKGGL

Query:  CISKINDSNFAFMCKWLWRFHNEASFLW
         +      N A + K  WR   E + LW
Subjt:  CISKINDSNFAFMCKWLWRFHNEASFLW
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.8e-0630.23Show/hide
Query:  SLPTYQLIVFKAPAKVYKNVEKHLRDFLWKNDNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKL
        +LPTY +  F  P  V K +   L DF W+N       H   W  ++  K +GG+    I   N A + K +WR  +    L  K+
Subjt:  SLPTYQLIVFKAPAKVYKNVEKHLRDFLWKNDNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGAAGAATTACCTTGATGCTTAGCCGAACTTGTGGTCGTTACAACAGAACTGAAACTGTGGCTTCCAAATGGGGTATCAATGTTCAGTTTCTCCTGACAACTTA
TTTAGGCACCCCTCTCGGCAAAAAACCTCTCTCTGTTTCTTTTAGGGACAACATCACTGAAAAAATTCAAAAGAAGCTTAGCAGCTGGAGATACTCCTACATATCAAAAG
GTGGGAAAGTTACACTCATTAACTCTTCTTTGGCCAGTTTGCCCACATATCAATTGATTGTTTTCAAAGCTCCTGCCAAGGTTTACAAAAATGTGGAGAAACATTTGAGA
GATTTTCTGTGGAAAAATGATAATAATGATGGTCAATCCCACCTCTTGAGATGGTCTAAAATCACTACTCCAAAGGAGAAAGGGGGTCTATGTATTAGCAAAATCAATGA
TTCAAATTTTGCGTTTATGTGCAAATGGCTTTGGAGATTTCACAATGAAGCCTCCTTTTTATGGAAAAAATTGATTTTGCCAAATATGAAGTGGGCTTCGGGGAAATTCC
TACCACTGACAAGTTCAGTAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAGAAGAATTACCTTGATGCTTAGCCGAACTTGTGGTCGTTACAACAGAACTGAAACTGTGGCTTCCAAATGGGGTATCAATGTTCAGTTTCTCCTGACAACTTA
TTTAGGCACCCCTCTCGGCAAAAAACCTCTCTCTGTTTCTTTTAGGGACAACATCACTGAAAAAATTCAAAAGAAGCTTAGCAGCTGGAGATACTCCTACATATCAAAAG
GTGGGAAAGTTACACTCATTAACTCTTCTTTGGCCAGTTTGCCCACATATCAATTGATTGTTTTCAAAGCTCCTGCCAAGGTTTACAAAAATGTGGAGAAACATTTGAGA
GATTTTCTGTGGAAAAATGATAATAATGATGGTCAATCCCACCTCTTGAGATGGTCTAAAATCACTACTCCAAAGGAGAAAGGGGGTCTATGTATTAGCAAAATCAATGA
TTCAAATTTTGCGTTTATGTGCAAATGGCTTTGGAGATTTCACAATGAAGCCTCCTTTTTATGGAAAAAATTGATTTTGCCAAATATGAAGTGGGCTTCGGGGAAATTCC
TACCACTGACAAGTTCAGTAGCTTAA
Protein sequenceShow/hide protein sequence
MMRRITLMLSRTCGRYNRTETVASKWGINVQFLLTTYLGTPLGKKPLSVSFRDNITEKIQKKLSSWRYSYISKGGKVTLINSSLASLPTYQLIVFKAPAKVYKNVEKHLR
DFLWKNDNNDGQSHLLRWSKITTPKEKGGLCISKINDSNFAFMCKWLWRFHNEASFLWKKLILPNMKWASGKFLPLTSSVA