CuGenDBv2

Gene ID	PI0025738
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Genome location	chr03:14316245..14316784
RNA-Seq Expression	PI0025738
Synteny	PI0025738
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060431.1 hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa]

5.9e-62

76.54

Show/hide

Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M T FEYIPRL+PEI  VLSGI KI  + LTPLE+YLNSYLKRVDNFNDVQSSYSAQLL TDK  QLDEKTS I+EALTLM++L+EDA VIQER  QLSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        EKKELE +LQS+N ESEQLSILSCEK EAI ++ELE+AKLQD+ N LE T AITEE  EALA +R+SMEAAREEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

KAA0061097.1 hypothetical protein E6C27_scaffold348G00060 [Cucumis melo var. makuwa]

2.7e-62

77.65

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Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M TSFEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL TDK  QL+EKTS IKEALTL+ QL+ DAKVIQER  +LSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        E+KELE +LQSIN ESEQLSILSCEK EAI+++ELE+ KLQD+ N LEST AI EEA EALATIR+SMEA REEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

KAA0065375.1 hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]

3.5e-62

77.09

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Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M T FEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL TDK  QL+EKTS IKE LTL+ QL+ DAKVIQER  +LSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        E+KELE +L+SIN ESEQLSILSCEK EAI+++ELE+AKLQD+ N LEST AITEEA EALAT+R+SMEAAREEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

TYK03767.1 hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa]

1.2e-62

78.21

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Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M TSFEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL TDK  QL+EKTS IKEALTL+ QL+ DAKVIQER  +LSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        E+KELE +LQSIN ESEQLSILSCEK EAI+++ELE+AKLQD+ N LEST AI EEA EALATIR+SMEA REEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

TYK06376.1 hypothetical protein E5676_scaffold163G00680 [Cucumis melo var. makuwa]

2.7e-62

77.65

Show/hide

Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M T FEYIPRL+PEI  VLSGI KI AD+LTPLE+YLNSYLKRVDNFNDVQSSY AQLL TDK  QL+EKTS IKEALTL++QL+ED KVIQER  +LSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        E+KEL+ +LQSIN ESEQLSILSCEK EAI+++EL+I KLQDK N LEST AITEEA EALATI KSM+AAREEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V2J6 Uncharacterized protein

1.3e-62

77.65

Show/hide

Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M TSFEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL TDK  QL+EKTS IKEALTL+ QL+ DAKVIQER  +LSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        E+KELE +LQSIN ESEQLSILSCEK EAI+++ELE+ KLQD+ N LEST AI EEA EALATIR+SMEA REEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

A0A5A7V3X5 PMD domain-containing protein

2.9e-62

76.54

Show/hide

Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M T FEYIPRL+PEI  VLSGI KI  + LTPLE+YLNSYLKRVDNFNDVQSSYSAQLL TDK  QLDEKTS I+EALTLM++L+EDA VIQER  QLSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        EKKELE +LQS+N ESEQLSILSCEK EAI ++ELE+AKLQD+ N LE T AITEE  EALA +R+SMEAAREEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

A0A5A7VHW8 PMD domain-containing protein

1.7e-62

77.09

Show/hide

Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M T FEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL TDK  QL+EKTS IKE LTL+ QL+ DAKVIQER  +LSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        E+KELE +L+SIN ESEQLSILSCEK EAI+++ELE+AKLQD+ N LEST AITEEA EALAT+R+SMEAAREEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

A0A5D3BW91 Uncharacterized protein

5.8e-63

78.21

Show/hide

Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M TSFEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL TDK  QL+EKTS IKEALTL+ QL+ DAKVIQER  +LSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        E+KELE +LQSIN ESEQLSILSCEK EAI+++ELE+AKLQD+ N LEST AI EEA EALATIR+SMEA REEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

A0A5D3C7S4 Uncharacterized protein

1.3e-62

77.65

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Query:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL
        M T FEYIPRL+PEI  VLSGI KI AD+LTPLE+YLNSYLKRVDNFNDVQSSY AQLL TDK  QL+EKTS IKEALTL++QL+ED KVIQER  +LSL
Subjt:  MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSL

Query:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK
        E+KEL+ +LQSIN ESEQLSILSCEK EAI+++EL+I KLQDK N LEST AITEEA EALATI KSM+AAREEF+NFK
Subjt:  EKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCACACTTCTTTTGAATATATCCCAAGGCTTAAGCCAGAAATAACAAAGGTTCTTTCAGGAATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAAAATATTT
GAATAGTTACCTTAAGAGGGTAGACAACTTCAATGATGTACAATCTTCATATTCCGCACAACTATTGTTGACAGATAAAACTCATCAATTGGACGAGAAGACATCTACCA
TCAAAGAAGCCTTGACTTTGATGGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGTTACACAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAAACTTCAG
AGTATAAATACTGAGTCTGAACAGCTATCCATCTTATCTTGTGAGAAAAATGAGGCCATAAATAGGAAGGAATTGGAGATTGCTAAGCTCCAAGACAAAGCTAATGCTCT
TGAAAGCACCCTTGCTATTACCGAAGAAGCCACTGAGGCCTTGGCTACGATTCGTAAGAGTATGGAGGCCGCACGCGAAGAATTCAGGAACTTCAAGTAG

mRNA sequence

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Protein sequence

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MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQ
SINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

PI0025738 (gene) of Melon (PI 482460) v1 genome