; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0025793 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025793
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:11851267..11851647
RNA-Seq ExpressionPI0025793
SyntenyPI0025793
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036791.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-2749.21Show/hide
Query:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ
        + YVFGKDR+ G  VE+F D+GSN P G++ F A+   DT  P  YSQGL+MSPDD+ GTR+ R+S+ R  SS SKRK+ G ++ +  I++ A+++ N Q
Subjt:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ

Query:  LKAIAEWPNLQRQDECVARAEVVSHM
        L  IAEWP LQRQD    R E++  +
Subjt:  LKAIAEWPNLQRQDECVARAEVVSHM

KAA0046928.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-2650.79Show/hide
Query:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ
        + YVFGKDRA G   E F D+GSN P GF+ F A+   DT  P TYS GL+MSPDD+  TR  R+S+ R  SS SKRK+ G +  + +I++ A+++ N Q
Subjt:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ

Query:  LKAIAEWPNLQRQDECVARAEVVSHM
        L  IAEWP LQRQD    R E+V H+
Subjt:  LKAIAEWPNLQRQDECVARAEVVSHM

KAA0056167.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-2659.43Show/hide
Query:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ
        +CYVFG+D   G HVETFV+VGSNV  G+EGF+ N GND +IP  YSQGLDMS DDI GTR  + S GR  SS SKRK  GQ+V+TV+II N++++ N+Q
Subjt:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ

Query:  LKAIAE
        L  I +
Subjt:  LKAIAE

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]7.2e-3062.5Show/hide
Query:  VETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNLQRQD
        VETF DVGSN P G+EGF A+ GND +IPM YSQG+DM  DDI GTR  R ++GRTGSS SKRKQGGQ+V+T+EII+N M+ +N++LKAI EW N+QRQD
Subjt:  VETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNLQRQD

Query:  ECVARAEVVSHM
              EVV  +
Subjt:  ECVARAEVVSHM

TYK11924.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-3059.48Show/hide
Query:  MGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNL
        MG   + FVDVGSNVPRG+EGF  +Y ND +IP  YS+GLDMS   I+GTR G  ++ R G SESK+K+GGQS++TVEII+N M++AN+QLKAIAEWPN+
Subjt:  MGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNL

Query:  QRQDECVARAEVVSHM
        Q QD    R E V  +
Subjt:  QRQDECVARAEVVSHM

TrEMBL top hitse value%identityAlignment
A0A5A7TVM3 Retrotransposon protein1.0e-2650.79Show/hide
Query:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ
        + YVFGKDRA G   E F D+GSN P GF+ F A+   DT  P TYS GL+MSPDD+  TR  R+S+ R  SS SKRK+ G +  + +I++ A+++ N Q
Subjt:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ

Query:  LKAIAEWPNLQRQDECVARAEVVSHM
        L  IAEWP LQRQD    R E+V H+
Subjt:  LKAIAEWPNLQRQDECVARAEVVSHM

A0A5A7UNI7 Retrotransposon protein2.3e-2659.43Show/hide
Query:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ
        +CYVFG+D   G HVETFV+VGSNV  G+EGF+ N GND +IP  YSQGLDMS DDI GTR  + S GR  SS SKRK  GQ+V+TV+II N++++ N+Q
Subjt:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ

Query:  LKAIAE
        L  I +
Subjt:  LKAIAE

A0A5A7V469 Retrotransposon protein3.5e-3062.5Show/hide
Query:  VETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNLQRQD
        VETF DVGSN P G+EGF A+ GND +IPM YSQG+DM  DDI GTR  R ++GRTGSS SKRKQGGQ+V+T+EII+N M+ +N++LKAI EW N+QRQD
Subjt:  VETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNLQRQD

Query:  ECVARAEVVSHM
              EVV  +
Subjt:  ECVARAEVVSHM

A0A5D3BC43 Retrotransposon protein9.5e-2849.21Show/hide
Query:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ
        + YVFGKDR+ G  VE+F D+GSN P G++ F A+   DT  P  YSQGL+MSPDD+ GTR+ R+S+ R  SS SKRK+ G ++ +  I++ A+++ N Q
Subjt:  MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQ

Query:  LKAIAEWPNLQRQDECVARAEVVSHM
        L  IAEWP LQRQD    R E++  +
Subjt:  LKAIAEWPNLQRQDECVARAEVVSHM

A0A5D3CL79 Retrotransposon protein2.0e-3059.48Show/hide
Query:  MGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNL
        MG   + FVDVGSNVPRG+EGF  +Y ND +IP  YS+GLDMS   I+GTR G  ++ R G SESK+K+GGQS++TVEII+N M++AN+QLKAIAEWPN+
Subjt:  MGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNL

Query:  QRQDECVARAEVVSHM
        Q QD    R E V  +
Subjt:  QRQDECVARAEVVSHM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTACGTATTTGGAAAAGATCGTGCGATGGGAGCTCACGTGGAGACATTCGTCGATGTGGGGTCGAATGTGCCTAGAGGTTTCGAGGGATTTCTCGCTAATTATGG
AAACGATACAAAGATCCCTATGACATACAGTCAGGGACTAGACATGTCACCTGATGATATCGAGGGCACACGACTCGGTCGCTTGAGTAAAGGTAGGACTGGTTCAAGCG
AATCGAAGAGGAAGCAGGGAGGCCAATCGGTAAAGACTGTGGAAATCATTCAGAATGCAATGGACTTCGCTAATAACCAGCTGAAGGCGATTGCAGAGTGGCCGAATTTA
CAACGTCAAGATGAATGCGTCGCTCGTGCAGAAGTCGTTAGCCACATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTACGTATTTGGAAAAGATCGTGCGATGGGAGCTCACGTGGAGACATTCGTCGATGTGGGGTCGAATGTGCCTAGAGGTTTCGAGGGATTTCTCGCTAATTATGG
AAACGATACAAAGATCCCTATGACATACAGTCAGGGACTAGACATGTCACCTGATGATATCGAGGGCACACGACTCGGTCGCTTGAGTAAAGGTAGGACTGGTTCAAGCG
AATCGAAGAGGAAGCAGGGAGGCCAATCGGTAAAGACTGTGGAAATCATTCAGAATGCAATGGACTTCGCTAATAACCAGCTGAAGGCGATTGCAGAGTGGCCGAATTTA
CAACGTCAAGATGAATGCGTCGCTCGTGCAGAAGTCGTTAGCCACATGTAG
Protein sequenceShow/hide protein sequence
MCYVFGKDRAMGAHVETFVDVGSNVPRGFEGFLANYGNDTKIPMTYSQGLDMSPDDIEGTRLGRLSKGRTGSSESKRKQGGQSVKTVEIIQNAMDFANNQLKAIAEWPNL
QRQDECVARAEVVSHM