CuGenDBv2

Gene ID	PI0025797
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Protein transport protein Sec61 subunit beta
Genome location	chr01:22918212..22925285
RNA-Seq Expression	PI0025797
Synteny	PI0025797
Gene Ontology terms	GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process) GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process) GO:0005784 - Sec61 translocon complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domains	IPR016482 - Protein transport protein SecG/Sec61-beta/Sbh

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605540.1 Syntaxin-71, partial [Cucurbita argyrosperma subsp. sororia]

6.0e-06

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

XP_004149541.1 protein transport protein Sec61 subunit beta [Cucumis sativus]

1.0e-05

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

XP_008463929.1 PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo]

1.0e-05

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

XP_022958107.1 protein transport protein Sec61 subunit beta [Cucurbita moschata]

6.0e-06

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

XP_038902812.1 protein transport protein Sec61 subunit beta [Benincasa hispida]

1.0e-05

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHR1 Protein transport protein Sec61 subunit beta

5.0e-06

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

A0A5D3CTD4 Protein transport protein Sec61 subunit beta

5.0e-06

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

A0A6J1CGL0 Protein transport protein Sec61 subunit beta

5.0e-06

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

A0A6J1H102 Protein transport protein Sec61 subunit beta

2.9e-06

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

A0A6J1JZ65 Protein transport protein Sec61 subunit beta

2.9e-06

77.78

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV LV+ LCF  FVTGLHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein

1.6e-04

57.14

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHV
        ML+FYTDDAP LKI   V L++ + F  FV  LHV
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHV

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein

1.6e-04

57.14

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHV
        ML+FYTDDAP LKI   V L++ + F  FV  LHV
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHV

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein

1.6e-04

57.14

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHV
        ML+FYTDDAP LKI   V L++ + F  FV  LHV
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHV

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein

1.6e-04

57.14

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHV
        ML+FYTDDAP LKI   V L++ + F  FV  LHV
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHV

AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein

6.2e-09

72.22

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Query:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF
        MLRFYTDDAP LKI  TV L++ LCF  FVT LHVF
Subjt:  MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVF

Sequences

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CDS sequence

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ATGCTAAGGTTTTACACTGACGATGCTCCTAGCTTGAAGATATTTTCCACCGTCACACTTGTCATAGGTCTATGCTTTTTCGACTTTGTCACTGGCCTCCACGTCTTTGA
AGATTGTAATGACCACACTTATTCCAGAAGATATTCTAATGACCTTATCGTTGCTGAGCGGGAACGATCAAGAATGATCAAGGAATTTTCCAAACGAATATGGAAGCAAA
ATGAAAGAAAGTCTTCTAGATGA

mRNA sequence

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Protein sequence

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MLRFYTDDAPSLKIFSTVTLVIGLCFFDFVTGLHVFEDCNDHTYSRRYSNDLIVAERERSRMIKEFSKRIWKQNERKSSR

PI0025797 (gene) of Melon (PI 482460) v1 genome