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PI0025825 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025825
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:28361950..28362391
RNA-Seq ExpressionPI0025825
SyntenyPI0025825
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047166.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-3360.17Show/hide
Query:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGY
        +  +  ID RIK +K+TFQ I E+R   CS FGWNDE KCIIAEKELFDNWV+S  AA  LLNKPFP+YD+L Y+F +DRAMG  +ETF DVGSN  GGY
Subjt:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGY

Query:  EGFPTDSGNDQEIPMMYS
        + F    GN +E P +Y+
Subjt:  EGFPTDSGNDQEIPMMYS

KAA0065929.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-3362.07Show/hide
Query:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGG
        +  +  ID RIK +K+TFQ I E+R   CS FGWNDEVKCIIAEKELFDNWV+S  AA  LLNKPFP+YD+L Y+FG+DRA G  +ETFADVGSN + GG
Subjt:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGG

Query:  YEGFPTDSGNDQEIPM
        Y+ F    GN+   PM
Subjt:  YEGFPTDSGNDQEIPM

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]1.1e-3562.18Show/hide
Query:  DILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGG
        ++  +  ID RIK +K+++Q I E+R   CS FGWND+ KCIIAEKE FDNWV+S  AA  LLNKPFP+YD   Y+FGKDRAMGAH ETFADVGSNV  G
Subjt:  DILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGG

Query:  YEGFPTDSGNDQEIPMMYS
        +E FP    ND EIP M S
Subjt:  YEGFPTDSGNDQEIPMMYS

XP_031743896.1 uncharacterized protein LOC116404722 [Cucumis sativus]3.2e-3565.18Show/hide
Query:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTD
        ID  IK +K+++Q I E+    CS FGWND+ KCI+AEKELFDNWV+S LAA  LLNKPFP+YD L YIFGKDRA GAH+ETFADVGSNV  G+E FP  
Subjt:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTD

Query:  SGNDQEIPMMYS
          ND +IP M+S
Subjt:  SGNDQEIPMMYS

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]1.2e-3460.5Show/hide
Query:  DILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGG
        ++  +  ID RIK +K+++Q I E+R   C  FGWND+VKCI+AEKELFDNWV+S  AA  LLNK FP+YD+L Y+FGKDRAMG H+ETFADVGSNV  G
Subjt:  DILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGG

Query:  YEGFPTDSGNDQEIPMMYS
        +E FP    ND E P M S
Subjt:  YEGFPTDSGNDQEIPMMYS

TrEMBL top hitse value%identityAlignment
A0A5A7TYW0 Retrotransposon protein1.1e-3360.17Show/hide
Query:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGY
        +  +  ID RIK +K+TFQ I E+R   CS FGWNDE KCIIAEKELFDNWV+S  AA  LLNKPFP+YD+L Y+F +DRAMG  +ETF DVGSN  GGY
Subjt:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGY

Query:  EGFPTDSGNDQEIPMMYS
        + F    GN +E P +Y+
Subjt:  EGFPTDSGNDQEIPMMYS

A0A5A7UWV7 Retrotransposon protein7.2e-3364.29Show/hide
Query:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTD
        ID RIK  K+TF  IVE+    CS FGWNDE KCII EKELFDNWV+S  AA  LLNKPFP+YD+L Y+F +DRAMG  ++TFADVGSN  GGYEGF   
Subjt:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTD

Query:  SGNDQEIPMMYS
         GN +E P +YS
Subjt:  SGNDQEIPMMYS

A0A5A7VES2 Retrotransposon protein7.2e-3360.5Show/hide
Query:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGG
        +  +  ID RIK +K+TFQ I E+R   CS FGWNDE KCIIAEKELFDNWV+S  AA  LLNKPFP+YD+L Y+FG+DRA G  +ETFADVGSN   GG
Subjt:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGG

Query:  YEGFPTDSGNDQEIPMMYS
        Y+ F    GN ++ P +YS
Subjt:  YEGFPTDSGNDQEIPMMYS

A0A5A7VKT2 Retrotransposon protein1.1e-3362.07Show/hide
Query:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGG
        +  +  ID RIK +K+TFQ I E+R   CS FGWNDEVKCIIAEKELFDNWV+S  AA  LLNKPFP+YD+L Y+FG+DRA G  +ETFADVGSN + GG
Subjt:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGG

Query:  YEGFPTDSGNDQEIPM
        Y+ F    GN+   PM
Subjt:  YEGFPTDSGNDQEIPM

A0A5D3DJA6 Retrotransposon protein4.2e-3361.02Show/hide
Query:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGG
        +  +  ID RIK +K+TFQ I E+R   CS FGWNDE KCIIAEKELFDNWV+S LAA  LLNKPFP+YD+L Y+FG+DRA G  +ETFADVGSN   GG
Subjt:  ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGG

Query:  YEGFPTDSGNDQEIPMMY
        Y+ F    GN ++ P +Y
Subjt:  YEGFPTDSGNDQEIPMMY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein1.8e-0422.86Show/hide
Query:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHS--------ETFADVGSNVSG
        +  R K++++ +  I  +     + F W+     +IA+ ++++ ++++   A +   K  P Y +LC+IFGK+ + G ++             V  N SG
Subjt:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHS--------ETFADVGSNVSG

Query:  GYEGF
          +GF
Subjt:  GYEGF

AT4G02210.1 unknown protein3.3e-0628.17Show/hide
Query:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFG
        +  R K++++ F  I  I RS    F W++E + + A+  ++ +++K+   A   + +P P+Y DLC + G
Subjt:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFG

AT4G02210.2 unknown protein3.3e-0628.17Show/hide
Query:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFG
        +  R K++++ F  I  I RS    F W++E + + A+  ++ +++K+   A   + +P P+Y DLC + G
Subjt:  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGACATCCTAGGTTCGCCAACAATAGACCGTCGGATAAAAAACATGAAGAAAACGTTCCAGACCATCGTAGAAATACGCAGGTCGTTGTGTAGTAGATTCGGTTG
GAACGATGAAGTGAAATGCATCATCGCTGAGAAGGAGTTGTTTGACAATTGGGTGAAGAGTCCTCTTGCTGCCAATGCCCTCTTAAACAAGCCTTTTCCCCATTACGACG
ACCTGTGCTACATATTTGGAAAAGATCGTGCGATGGGAGCGCACTCGGAGACATTCGCCGATGTGGGGTCGAATGTGTCTGGAGGGTACGAGGGATTTCCTACTGACAGT
GGAAACGATCAGGAGATCCCTATGATGTACAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGACATCCTAGGTTCGCCAACAATAGACCGTCGGATAAAAAACATGAAGAAAACGTTCCAGACCATCGTAGAAATACGCAGGTCGTTGTGTAGTAGATTCGGTTG
GAACGATGAAGTGAAATGCATCATCGCTGAGAAGGAGTTGTTTGACAATTGGGTGAAGAGTCCTCTTGCTGCCAATGCCCTCTTAAACAAGCCTTTTCCCCATTACGACG
ACCTGTGCTACATATTTGGAAAAGATCGTGCGATGGGAGCGCACTCGGAGACATTCGCCGATGTGGGGTCGAATGTGTCTGGAGGGTACGAGGGATTTCCTACTGACAGT
GGAAACGATCAGGAGATCCCTATGATGTACAGTTAG
Protein sequenceShow/hide protein sequence
MSDILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTDS
GNDQEIPMMYS