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PI0025826 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025826
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr08:53736..54635
RNA-Seq ExpressionPI0025826
SyntenyPI0025826
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036729.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-4282.88Show/hide
Query:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS
        P FEVAKNIWE++ KPPKGGI+IKENP IDEH+SS E + EEMPHLNIMSVMV DVDTSE+RMAELE KVNML+KAVEERDYEIASLKNHIES DAAESS
Subjt:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS

Query:  HTYTIKNKDKG
        HT+TIKN +KG
Subjt:  HTYTIKNKDKG

KAA0041857.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-4180.36Show/hide
Query:  MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAES
        MPPFEVAKNIWE++ KPPKGGI+IKENP IDEH S S+ +SEEMPH NIMSVMV +VDTSE+RMAELE KVNML+K VEERDYEIA LKNHIES DAAES
Subjt:  MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAES

Query:  SHTYTIKNKDKG
        SH YT+KN DKG
Subjt:  SHTYTIKNKDKG

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.1e-4179.46Show/hide
Query:  MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAES
        MPPF+VAKNIWE++ KPPKGGI+IKENP +DEH+S SER++EE+P  NIMSVMV DVDTSEDRMAELE KVNML+KAVEERD+EIA LKNHIES DAAES
Subjt:  MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAES

Query:  SHTYTIKNKDKG
        SHT+TIKN +KG
Subjt:  SHTYTIKNKDKG

KAA0054932.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-4178.38Show/hide
Query:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS
        PPFEV KNIWE++ KPPKGGI+IKENP IDEH+S SER++EE+PH NIMSVMV DVDTS+DRM ELE K+NML+KAVEE+D+EIASLKNHIESPDA ESS
Subjt:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS

Query:  HTYTIKNKDKG
        HT+TIK  DKG
Subjt:  HTYTIKNKDKG

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-4384.68Show/hide
Query:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS
        P FEVAKNIWE++ KPPKGGI+IKENP IDEH+SS E +SEEMPHLNIMSVMV DVDTSE+RMAELE KVNML+KAVEERDYEIASLKNHIES DAAESS
Subjt:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS

Query:  HTYTIKNKDKG
        HT+TIKN DKG
Subjt:  HTYTIKNKDKG

TrEMBL top hitse value%identityAlignment
A0A5A7T5T3 Ty3-gypsy retrotransposon protein1.2e-4282.88Show/hide
Query:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS
        P FEVAKNIWE++ KPPKGGI+IKENP IDEH+SS E + EEMPHLNIMSVMV DVDTSE+RMAELE KVNML+KAVEERDYEIASLKNHIES DAAESS
Subjt:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS

Query:  HTYTIKNKDKG
        HT+TIKN +KG
Subjt:  HTYTIKNKDKG

A0A5A7TZU9 Ribonuclease H1.0e-4179.46Show/hide
Query:  MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAES
        MPPF+VAKNIWE++ KPPKGGI+IKENP +DEH+S SER++EE+P  NIMSVMV DVDTSEDRMAELE KVNML+KAVEERD+EIA LKNHIES DAAES
Subjt:  MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAES

Query:  SHTYTIKNKDKG
        SHT+TIKN +KG
Subjt:  SHTYTIKNKDKG

A0A5A7U5H1 Ty3-gypsy retrotransposon protein1.3e-4179.46Show/hide
Query:  MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAES
        MPPFEV KNIWE++ KPPKGGI+IKENP IDEH+S SER++EE+P  NIMSVMV DVDTSEDRMAELE KVNML+KAVEE+D+EIA LKNHIES DAAES
Subjt:  MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAES

Query:  SHTYTIKNKDKG
        SHT+TIKN +KG
Subjt:  SHTYTIKNKDKG

A0A5D3C857 Ty3-gypsy retrotransposon protein8.4e-4484.68Show/hide
Query:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS
        P FEVAKNIWE++ KPPKGGI+IKENP IDEH+SS E +SEEMPHLNIMSVMV DVDTSE+RMAELE KVNML+KAVEERDYEIASLKNHIES DAAESS
Subjt:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS

Query:  HTYTIKNKDKG
        HT+TIKN DKG
Subjt:  HTYTIKNKDKG

A0A5D3DG98 Ty3-gypsy retrotransposon protein1.0e-4178.38Show/hide
Query:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS
        PPFEV KNIWE++ KPPKGGI+IKENP IDEH+S SER++EE+PH NIMSVMV DVDTS+DRM ELE K+NML+KAVEE+D+EIASLKNHIESPDA ESS
Subjt:  PPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESS

Query:  HTYTIKNKDKG
        HT+TIK  DKG
Subjt:  HTYTIKNKDKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAAAAGTTGTTAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCACGATTCGTCCTC
TGAACGCACAAGTGAGGAGATGCCTCACCTAAATATAATGTCGGTTATGGTGATTGATGTTGATACAAGTGAAGATAGAATGGCTGAGCTTGAAAATAAGGTTAACATGC
TCCTCAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCCTGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGAC
AAAGGGATTTCAAGCGAACAAAGGATGTCAGGCGAGGAACACTACGCGAAGAAGCTGCAGGCGAGGAAGTATGCGAGCAACCAGGCGATCGTGAATACGGCTATGCGGAC
CTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAAAAGTTGTTAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCACGATTCGTCCTC
TGAACGCACAAGTGAGGAGATGCCTCACCTAAATATAATGTCGGTTATGGTGATTGATGTTGATACAAGTGAAGATAGAATGGCTGAGCTTGAAAATAAGGTTAACATGC
TCCTCAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCCTGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGAC
AAAGGGATTTCAAGCGAACAAAGGATGTCAGGCGAGGAACACTACGCGAAGAAGCTGCAGGCGAGGAAGTATGCGAGCAACCAGGCGATCGTGAATACGGCTATGCGGAC
CTGA
Protein sequenceShow/hide protein sequence
MPPFEVAKNIWEKLLKPPKGGIIIKENPVIDEHDSSSERTSEEMPHLNIMSVMVIDVDTSEDRMAELENKVNMLLKAVEERDYEIASLKNHIESPDAAESSHTYTIKNKD
KGISSEQRMSGEEHYAKKLQARKYASNQAIVNTAMRT