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PI0025853 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025853
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLysM domain-containing protein
Genome locationchr08:17526059..17526364
RNA-Seq ExpressionPI0025853
SyntenyPI0025853
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647420.1 hypothetical protein Csa_003059 [Cucumis sativus]8.8e-4795.15Show/hide
Query:  MGKRSSSSSSS--SKAKVVNLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPTF
        MGKRSSSSSSS  SKAKVV+LVILVLSCLIWCCKSSELL YNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHF KYPTF
Subjt:  MGKRSSSSSSS--SKAKVVNLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPTF

Query:  LTP
        LTP
Subjt:  LTP

KAF9676608.1 hypothetical protein SADUNF_Sadunf08G0020300 [Salix dunnii]2.7e-1952.29Show/hide
Query:  MGKRSSSSSSSSKAKVVNLVILVLSCLIWCCKSSE-----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        MG  SSS++ + K      +++ L  ++ CC+ SE             +  C+EIYVV EGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPF
Subjt:  MGKRSSSSSSSSKAKVVNLVILVLSCLIWCCKSSE-----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

Query:  HHFIKYPTF
        +   + P F
Subjt:  HHFIKYPTF

KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]9.8e-2268.29Show/hide
Query:  SSSKAKVVNLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        SSS+ + + LV+++    +WCC S E+L   C+EIYVV EGETLQSISEKCGDPFI E NPHIND DDVFPGLVIKITPF H
Subjt:  SSSKAKVVNLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

XP_010271716.1 PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera]2.7e-1957.43Show/hide
Query:  GKRSSSSSSSSKAKVVN---LVILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        G  SSS+ ++S A+ ++    ++LV+  L+ CC SSE          ++   C+EIYVV EGETL +ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITP
Subjt:  GKRSSSSSSSSKAKVVN---LVILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

Query:  F
        F
Subjt:  F

XP_022744694.1 uncharacterized protein LOC111295462 [Durio zibethinus]7.1e-2055.56Show/hide
Query:  MGKRSSSSSSSSKAK----VVNLVILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLV
        MG+ SS+S  + K      +   V+L+LSC   CC+ S   +Y              C+EIYVV EGETLQ+ISEKCGDPFIVEENPHI+DPDDVFPGLV
Subjt:  MGKRSSSSSSSSKAK----VVNLVILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLV

Query:  IKITPFHH
        IKITPF++
Subjt:  IKITPFHH

TrEMBL top hitse value%identityAlignment
A0A1R3IHT9 LysM domain-containing protein3.8e-1949.54Show/hide
Query:  MGKRSSSSSSSSKAKVVNLVILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGL
        MG+ SS+++ +        + + +  ++ CC+SS+  E+                   C+EIYVV EGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGL
Subjt:  MGKRSSSSSSSSKAKVVNLVILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGL

Query:  VIKITPFHH
        VIKITPFH+
Subjt:  VIKITPFHH

A0A1U8AYB4 uncharacterized protein LOC1046077161.3e-1957.43Show/hide
Query:  GKRSSSSSSSSKAKVVN---LVILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        G  SSS+ ++S A+ ++    ++LV+  L+ CC SSE          ++   C+EIYVV EGETL +ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITP
Subjt:  GKRSSSSSSSSKAKVVN---LVILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

Query:  F
        F
Subjt:  F

A0A6J1AQQ1 uncharacterized protein LOC1104203732.2e-1952.43Show/hide
Query:  MGKRSSSSSSSSKAKVVNLVILVLSCLIWCCKSSE--------------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI
        MG+ SS+++ + K      + + +  ++ CC+SSE              ++   C+EIYVV EGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKI
Subjt:  MGKRSSSSSSSSKAKVVNLVILVLSCLIWCCKSSE--------------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI

Query:  TPF
        TPF
Subjt:  TPF

A0A6P5YVX7 uncharacterized protein LOC1112954623.4e-2055.56Show/hide
Query:  MGKRSSSSSSSSKAK----VVNLVILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLV
        MG+ SS+S  + K      +   V+L+LSC   CC+ S   +Y              C+EIYVV EGETLQ+ISEKCGDPFIVEENPHI+DPDDVFPGLV
Subjt:  MGKRSSSSSSSSKAK----VVNLVILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLV

Query:  IKITPFHH
        IKITPF++
Subjt:  IKITPFHH

A0A803MQG7 Uncharacterized protein2.9e-1973.02Show/hide
Query:  WCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        W   S +++   C+E+YVV EGETL SISEKCGDP+IVEENPHINDPDDVFPGLVIKITPF +
Subjt:  WCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein6.0e-1777.08Show/hide
Query:  CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        C+EIY V EGETLQ+ISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Subjt:  CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein1.3e-1966.13Show/hide
Query:  SCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI
        +C +W  +  +++E  CEE+YVV EG+TL SISEKCGDPFIVE NPHI+DPDDVFPGL+IK+
Subjt:  SCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein2.2e-1951.58Show/hide
Query:  GKRSSSSSSSSKAKVVNLVILVLSCLIW------CCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH
        G R+ SS  S+    V L+ L+L   +         + S+     CEEIY+V EGETL +I +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Subjt:  GKRSSSSSSSSKAKVVNLVILVLSCLIW------CCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGAGATCATCATCATCATCATCATCATCAAAGGCAAAGGTGGTTAATTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATT
AGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATG
ATCCGGATGATGTTTTTCCTGGTTTGGTTATCAAGATTACTCCTTTTCACCATTTTATCAAATATCCTACCTTTCTCACACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGAGATCATCATCATCATCATCATCATCAAAGGCAAAGGTGGTTAATTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATT
AGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATG
ATCCGGATGATGTTTTTCCTGGTTTGGTTATCAAGATTACTCCTTTTCACCATTTTATCAAATATCCTACCTTTCTCACACCTTAA
Protein sequenceShow/hide protein sequence
MGKRSSSSSSSSKAKVVNLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPTFLTP