; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0025854 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025854
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:10087149..10088488
RNA-Seq ExpressionPI0025854
SyntenyPI0025854
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-0766.67Show/hide
Query:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK
        EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD LAE+
Subjt:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]7.6e-5963.73Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DLVC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN++LL VI LHDELL KPQ V + C D RWRWFE     +  T I  +V   D     T   E+
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-0766.67Show/hide
Query:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK
        EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD LAE+
Subjt:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]7.6e-5963.73Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DLVC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN++LL VI LHDELL KPQ V + C D RWRWFE     +  T I  +V   D     T   E+
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-6651.81Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQ+QLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DLVC QSTR+ RRCFTILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEEMTN--------TNIP---------------------
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN++LL VI LH+ELL KPQ V + C D RWRWFE   +         N+P                     
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEEMTN--------TNIP---------------------

Query:  ---------------------------------------DDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK
                                               D++DE DST+ATT +++IHYIETS+ WSQWRD+LAE+
Subjt:  ---------------------------------------DDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-5963.73Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIHE+DLVC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI
        FLH+LAHDVKNRVIQREF+RS ET+ RHFN+I L VI LHDELL KPQ V + C D RWRWFE     +  T I  +V   D     T   E+
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-0866.67Show/hide
Query:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK
        EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD+LAE+
Subjt:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-5863.21Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DLVC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN++LL VI LH+ELL KPQ V + C D RWRWFE     +  T I  +V   D     T   E+
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI

TrEMBL top hitse value%identityAlignment
A0A5A7TXW1 Retrotransposon protein3.7e-5963.73Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DLVC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN++LL VI LHDELL KPQ V + C D RWRWFE     +  T I  +V   D     T   E+
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI

A0A5A7TXW1 Retrotransposon protein6.6e-0866.67Show/hide
Query:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK
        EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD LAE+
Subjt:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK

A0A5A7TXW1 Retrotransposon protein3.7e-5963.73Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DLVC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN++LL VI LHDELL KPQ V + C D RWRWFE     +  T I  +V   D     T   E+
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI

A0A5A7VHB0 Retrotransposon protein4.8e-5963.73Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIHE+DLVC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI
        FLH+LAHDVKNRVIQREF+RS ET+ RHFN+I L VI LHDELL KPQ V + C D RWRWFE     +  T I  +V   D     T   E+
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI

A0A5A7VHB0 Retrotransposon protein3.8e-0866.67Show/hide
Query:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK
        EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD+LAE+
Subjt:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK

A0A5A7VHB0 Retrotransposon protein1.1e-5863.21Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DLVC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN++LL VI LH+ELL KPQ V + C D RWRWFE     +  T I  +V   D     T   E+
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDEGDSTYATTGSEEI

A0A5D3BDX0 Retrotransposon protein6.6e-0866.67Show/hide
Query:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK
        EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD LAE+
Subjt:  EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK

A0A5D3BZB1 Retrotransposon protein6.2e-6751.81Show/hide
Query:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM
        MD H ++ S++N FI SQ+QLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DLVC QSTR+ RRCFTILCHLLRT+AGL  TE+++VEEMVAM
Subjt:  MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAM

Query:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEEMTN--------TNIP---------------------
        FLH+LAHDVKNRVIQREF+RS ET+SRHFN++LL VI LH+ELL KPQ V + C D RWRWFE   +         N+P                     
Subjt:  FLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEEMTN--------TNIP---------------------

Query:  ---------------------------------------DDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK
                                               D++DE DST+ATT +++IHYIETS+ WSQWRD+LAE+
Subjt:  ---------------------------------------DDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.8e-1040.24Show/hide
Query:  FRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLIL
        +R + ++   C Q  R+   CFT LC++L+T   LQPT  I++EE VAMFL +  H+   R +   F R+ ETV R F  +L
Subjt:  FRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLIL

AT5G28730.1 unknown protein1.0e-0532.29Show/hide
Query:  IHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSV
        I+ N++ C    R+    FT LC +L    GLQ +  I+++E VA+FL + A +   R I   F  + ET+ R F+ +L  +  L  E + +P+ V
Subjt:  IHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSV

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.2e-0935.87Show/hide
Query:  CCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTST
        C ++ R+ +  F  LC LL+T   L+ T  I +E  +A+FL ++ H+++ R +Q  F  S ET+SRHFN +L  VI +  +   +P S + T
Subjt:  CCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACACACGACGATATTGTGTCCTTACTTAACATGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAGCGCA
AGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGACTTACTTTCGCATGATCCATGAAAACGACCTCGTGTGTTGTCAAAGTACGCGAATAGGCAGACGATGCTTCA
CCATTTTATGCCACCTACTTCGGACTGTAGCTGGATTACAACCGACCGAAATGATCAATGTCGAAGAAATGGTCGCCATGTTTCTTCACGTACTGGCGCACGACGTGAAA
AATCGTGTCATTCAACGTGAGTTCGTGCGGTCCGATGAGACTGTTTCACGTCATTTCAATCTGATATTGCTGGATGTTATACACCTCCATGACGAGCTTTTGGCAAAACC
ACAATCGGTGACGAGCACTTGCTTAGATGCACGGTGGAGGTGGTTCGAGGAGATGACGAACACTAATATACCGGATGACGTTGATGAGGGTGACTCTACGTACGCCACCA
CTGGCAGTGAAGAAATTCACTATATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAACACC
CAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACACACACGACGATATTGTGTCCTTACTTAACATGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAGCGCA
AGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGACTTACTTTCGCATGATCCATGAAAACGACCTCGTGTGTTGTCAAAGTACGCGAATAGGCAGACGATGCTTCA
CCATTTTATGCCACCTACTTCGGACTGTAGCTGGATTACAACCGACCGAAATGATCAATGTCGAAGAAATGGTCGCCATGTTTCTTCACGTACTGGCGCACGACGTGAAA
AATCGTGTCATTCAACGTGAGTTCGTGCGGTCCGATGAGACTGTTTCACGTCATTTCAATCTGATATTGCTGGATGTTATACACCTCCATGACGAGCTTTTGGCAAAACC
ACAATCGGTGACGAGCACTTGCTTAGATGCACGGTGGAGGTGGTTCGAGGAGATGACGAACACTAATATACCGGATGACGTTGATGAGGGTGACTCTACGTACGCCACCA
CTGGCAGTGAAGAAATTCACTATATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAACACC
CAATGA
Protein sequenceShow/hide protein sequence
MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVK
NRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEEMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEKCSVIGSCVISNT
Q