CuGenDBv2

Gene ID	PI0025918
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr03:17790230..17790924
RNA-Seq Expression	PI0025918
Synteny	PI0025918
Gene Ontology terms	GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.0e-32

59.85

Show/hide

Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++TSSLL  ++TE  SS  +Q F SGNKI +VKL D+ FLLWKFQI T  EAYDLE F++  +EPP K L       + T + S+S T   NP Y  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
         QDRLISSWLLGSM++EILNQMLHC SAK+IW+TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

2.2e-27

54.74

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Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++ SS L  ++TE         F SGNKI +VKL D+NFLLWKFQI T  EAYDLE F +   EPP K L         T + S+S T+  NPEY  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
          +RLIS WLLGSM++EILNQM+HC SAK+IW TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

6.5e-32

59.85

Show/hide

Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++TSSLL  ++TE  SS  +Q F S NKI +VKL D+NFLLWKFQI T  EAYDLE F++  +EPP K L       + T + S+S T+  NP Y  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
         QDRLISSWLLGSM++EILNQMLHC SAK+IW TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.0e-32

59.85

Show/hide

Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++TSSLL  ++TE  SS  +Q F SGNKI +VKL D+ FLLWKFQI T  EAYDLE F++  +EPP K L       + T + S+S T   NP Y  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
         QDRLISSWLLGSM++EILNQMLHC SAK+IW+TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

6.5e-32

59.85

Show/hide

Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++TSSLL  ++TE  SS  +Q F S NKI +VKL D+NFLLWKFQI T  EAYDLE F++  +EPP K L       + T + S+S T+  NP Y  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
         QDRLISSWLLGSM++EILNQMLHC SAK+IW TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-32

59.85

Show/hide

Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++TSSLL  ++TE  SS  +Q F SGNKI +VKL D+ FLLWKFQI T  EAYDLE F++  +EPP K L       + T + S+S T   NP Y  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
         QDRLISSWLLGSM++EILNQMLHC SAK+IW+TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

1.0e-27

54.74

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Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++ SS L  ++TE         F SGNKI +VKL D+NFLLWKFQI T  EAYDLE F +   EPP K L         T + S+S T+  NPEY  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
          +RLIS WLLGSM++EILNQM+HC SAK+IW TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

3.1e-32

59.85

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Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++TSSLL  ++TE  SS  +Q F S NKI +VKL D+NFLLWKFQI T  EAYDLE F++  +EPP K L       + T + S+S T+  NP Y  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
         QDRLISSWLLGSM++EILNQMLHC SAK+IW TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-32

59.85

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Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++TSSLL  ++TE  SS  +Q F SGNKI +VKL D+ FLLWKFQI T  EAYDLE F++  +EPP K L       + T + S+S T   NP Y  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
         QDRLISSWLLGSM++EILNQMLHC SAK+IW+TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

3.1e-32

59.85

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Query:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK
        M++TSSLL  ++TE  SS  +Q F S NKI +VKL D+NFLLWKFQI T  EAYDLE F++  +EPP K L       + T + S+S T+  NP Y  WK
Subjt:  MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWK

Query:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG
         QDRLISSWLLGSM++EILNQMLHC SAK+IW TLQG
Subjt:  WQDRLISSWLLGSMNKEILNQMLHCTSAKDIWQTLQG

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

5.0e-11

33.33

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Query:  VVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWKWQDRLISSWLLGSMNKEILNQMLHCTSAKDI
        V KL   N+L+W  Q+  + + Y+L  F+D              STT+P  T+ +     +NP+YT+WK QD+LI S +LG+++  +   +   T+A  I
Subjt:  VVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWKWQDRLISSWLLGSMNKEILNQMLHCTSAKDI

Query:  WQTLQ
        W+TL+
Subjt:  WQTLQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

5.5e-10

29.46

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Query:  LSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWKWQDRLIS
        ++T + E +  +T  N  + N   V KL   N+L+W  Q+  + + Y+L  F+D +T  PP              T+ +     +NP+YT+W+ QD+LI 
Subjt:  LSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWKWQDRLIS

Query:  SWLLGSMNKEILNQMLHCTSAKDIWQTLQ
        S +LG+++  +   +   T+A  IW+TL+
Subjt:  SWLLGSMNKEILNQMLHCTSAKDIWQTLQ

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACTACCACCTCCTCACTCCTAAGCACCGACTCCACTGAAAACATATCCTCATCAACCTCACAAAATTTTGCCTCTGGTAACAAAATTTTCGTTGTTAAACTCGGAGA
TGAAAATTTCCTACTGTGGAAATTTCAAATATGCACCGTCCAAGAAGCATATGATCTTGAAACCTTCATCGATCCCGCGACCGAACCACCACCCAAACTTCTTCCAATAC
AAACCTCCACCACACTACCCACCAACACAGTATCTTCATCAACCACACAATACCTCAACCCTGAATACACAAAATGGAAATGGCAAGATCGACTAATTTCTTCTTGGCTC
CTAGGCTCAATGAACAAAGAAATTTTGAATCAGATGCTACACTGTACCTCAGCCAAAGATATTTGGCAAACACTCCAAGGAAGCCCATAA

mRNA sequence

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Protein sequence

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MTTTSSLLSTDSTENISSSTSQNFASGNKIFVVKLGDENFLLWKFQICTVQEAYDLETFIDPATEPPPKLLPIQTSTTLPTNTVSSSTTQYLNPEYTKWKWQDRLISSWL
LGSMNKEILNQMLHCTSAKDIWQTLQGSP

PI0025918 (gene) of Melon (PI 482460) v1 genome