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PI0025937 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025937
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:362445..364003
RNA-Seq ExpressionPI0025937
SyntenyPI0025937
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]8.7e-7079.19Show/hide
Query:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV
        +VSELKSQMLN+TTLLTSFVQG PLKV KCGVC LVGHPNDKC ++IEDVN++RKY+P+GNTYN GWRDNPNLRW NDNQK TQA  +SSNQG NLEDI+
Subjt:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV

Query:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALP
        KALATNTLSFQQEMKQQMTQLTTAISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP++   KE+ +  K LP
Subjt:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALP

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-6981.6Show/hide
Query:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV
        +VSELKSQMLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKC ++IEDVN++RKY+PHGNTYN GWRDNPNLRW NDNQK TQA S+SSNQG NLEDI+
Subjt:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV

Query:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIK
        KALATNTLSFQQEMKQQMTQLTTAISK++GKGKL AQ ++ANVS +SLRSGKIL+TP+++E K
Subjt:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-7081.21Show/hide
Query:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV
        +VSELKSQMLN+TTLLTSFVQG P KV KCGVCGLVGHPNDKCL +IEDVN++R+Y+PH NTYN GWRDNPNLRW NDNQK TQA S+SSNQG NLEDI+
Subjt:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV

Query:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQ
        KAL TNTLSFQQEMKQQMTQLTTAISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP+++E K++
Subjt:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQ

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-6878.61Show/hide
Query:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV
        +VSELKSQMLN+TTLLTSFVQG P KV KCGVCGLVGHPNDKC  +IEDVN++R+Y+PH NTYN GWRDN NLRW NDNQK TQA S+SSNQG NLEDI+
Subjt:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV

Query:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALP
        KALATNTLSFQQ+MKQQMTQLTTAISK++GKGKLPAQPDHANVS ISLRSGKIL+TP++   KE+ +  K LP
Subjt:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALP

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-6978.11Show/hide
Query:  EMIFKNQVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGM
        E     +VSELKS+MLN+TTLLTSFVQG P KV KCGVCGLVGHPNDKC ++IED+N++R+Y+PHGNTYNLGWRD PNLRW ND Q  TQA S+SSNQG 
Subjt:  EMIFKNQVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGM

Query:  NLEDIVKALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIK
        NLEDI+KAL TNTLSFQQEMKQQMTQLTTAISK++GKGKLPAQPDHANVS ISLRSGKIL+TP+++E K
Subjt:  NLEDIVKALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIK

TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein1.9e-7081.21Show/hide
Query:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV
        +VSELKSQMLN+TTLLTSFVQG P KV KCGVCGLVGHPNDKCL +IEDVN++R+Y+PH NTYN GWRDNPNLRW NDNQK TQA S+SSNQG NLEDI+
Subjt:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV

Query:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQ
        KAL TNTLSFQQEMKQQMTQLTTAISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP+++E K++
Subjt:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQ

A0A5D3CB46 Retrotransposon gag protein6.1e-6978.61Show/hide
Query:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV
        +VSELKSQMLN+TTLLTSFVQG P KV KCGVCGLVGHPNDKC  +IEDVN++R+Y+PH NTYN GWRDN NLRW NDNQK TQA S+SSNQG NLEDI+
Subjt:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV

Query:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALP
        KALATNTLSFQQ+MKQQMTQLTTAISK++GKGKLPAQPDHANVS ISLRSGKIL+TP++   KE+ +  K LP
Subjt:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALP

A0A5D3CFE7 Retrotransposon gag protein1.2e-6978.11Show/hide
Query:  EMIFKNQVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGM
        E     +VSELKS+MLN+TTLLTSFVQG P KV KCGVCGLVGHPNDKC ++IED+N++R+Y+PHGNTYNLGWRD PNLRW ND Q  TQA S+SSNQG 
Subjt:  EMIFKNQVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGM

Query:  NLEDIVKALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIK
        NLEDI+KAL TNTLSFQQEMKQQMTQLTTAISK++GKGKLPAQPDHANVS ISLRSGKIL+TP+++E K
Subjt:  NLEDIVKALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIK

A0A5D3CRR8 Retrotransposon gag protein2.1e-6981.6Show/hide
Query:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV
        +VSELKSQMLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKC ++IEDVN++RKY+PHGNTYN GWRDNPNLRW NDNQK TQA S+SSNQG NLEDI+
Subjt:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV

Query:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIK
        KALATNTLSFQQEMKQQMTQLTTAISK++GKGKL AQ ++ANVS +SLRSGKIL+TP+++E K
Subjt:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIK

E5GBZ4 Retrotransposon gag protein4.2e-7079.19Show/hide
Query:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV
        +VSELKSQMLN+TTLLTSFVQG PLKV KCGVC LVGHPNDKC ++IEDVN++RKY+P+GNTYN GWRDNPNLRW NDNQK TQA  +SSNQG NLEDI+
Subjt:  QVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQATSSSSNQGMNLEDIV

Query:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALP
        KALATNTLSFQQEMKQQMTQLTTAISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP++   KE+ +  K LP
Subjt:  KALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGCCTGGTCGCCTCACTATTTCAGTCGCATACTTAGAGCCTTAATTCATATTTACGAAATGATTTTTAAGAATCAGGTAAGTGAATTAAAATCTCAAATGTTAAA
TTTGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGCCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCCAATGATAAATGCCTCGACTTGATTG
AGGATGTTAATGTAATTCGTAAGTACAACCCCCACGGTAATACATACAATTTGGGATGGAGAGACAACCCAAACTTGAGATGGAGGAATGACAACCAAAAGCCCACCCAA
GCAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACT
CACCACCGCCATAAGTAAGTTGGAAGGAAAAGGCAAGCTTCCGGCCCAACCAGACCATGCAAATGTGAGTGTCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCCCTT
CTAGTGAAGAAATAAAGGAACAAGGGATTGAGCTTAAAGCTCTCCCGCCACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGCCTGGTCGCCTCACTATTTCAGTCGCATACTTAGAGCCTTAATTCATATTTACGAAATGATTTTTAAGAATCAGGTAAGTGAATTAAAATCTCAAATGTTAAA
TTTGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGCCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCCAATGATAAATGCCTCGACTTGATTG
AGGATGTTAATGTAATTCGTAAGTACAACCCCCACGGTAATACATACAATTTGGGATGGAGAGACAACCCAAACTTGAGATGGAGGAATGACAACCAAAAGCCCACCCAA
GCAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACT
CACCACCGCCATAAGTAAGTTGGAAGGAAAAGGCAAGCTTCCGGCCCAACCAGACCATGCAAATGTGAGTGTCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCCCTT
CTAGTGAAGAAATAAAGGAACAAGGGATTGAGCTTAAAGCTCTCCCGCCACATTGA
Protein sequenceShow/hide protein sequence
MLAWSPHYFSRILRALIHIYEMIFKNQVSELKSQMLNLTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCLDLIEDVNVIRKYNPHGNTYNLGWRDNPNLRWRNDNQKPTQ
ATSSSSNQGMNLEDIVKALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEIKEQGIELKALPPH