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PI0025966 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025966
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLysM domain-containing protein
Genome locationchr04:2417301..2418025
RNA-Seq ExpressionPI0025966
SyntenyPI0025966
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4386922.1 hypothetical protein F8388_006877 [Cannabis sativa]4.2e-1469.23Show/hide
Query:  CNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLI
        C  VYGVK+GDTCFAL QKFK+TTD F  INPNLNC  LF+ QWLC+D  L+
Subjt:  CNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLI

KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]4.2e-2263.54Show/hide
Query:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRV----EGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I  S  IFLLA SLLI +ISV+ R+    V      LELQCNK YGVK+GDTCFA+ Q FK+TTDHF+FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRV----EGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]2.6e-4092.86Show/hide
Query:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFR--VE-GLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLILP
        MAKAMISSSFPIFLLAFSLLI SISVETRSTPFR  VE GLELQCNKVYGVKNGDTCF LEQKFKITT HF+FINPNLNCTDLFIGQWLCLDAVLILP
Subjt:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFR--VE-GLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLILP

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]4.2e-2265.22Show/hide
Query:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRVEGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I     IFLLAF LLI SISV+          LELQCNK YGVK+GDTCFAL   FK++TDHFNFINPNLNC+ LF+GQWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRVEGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]1.2e-2164.13Show/hide
Query:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRVEGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I  S  IFLLA SLLI +ISV+          LELQCNK YGVK+GDTCFA+ Q FK+TTDHF+FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRVEGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein1.3e-4092.86Show/hide
Query:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFR--VE-GLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLILP
        MAKAMISSSFPIFLLAFSLLI SISVETRSTPFR  VE GLELQCNKVYGVKNGDTCF LEQKFKITT HF+FINPNLNCTDLFIGQWLCLDAVLILP
Subjt:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFR--VE-GLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLILP

A0A0A0KLD2 LysM domain-containing protein2.0e-2263.54Show/hide
Query:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRV----EGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I  S  IFLLA SLLI +ISV+ R+    V      LELQCNK YGVK+GDTCFA+ Q FK+TTDHF+FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRV----EGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like2.0e-2265.22Show/hide
Query:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRVEGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I     IFLLAF LLI SISV+          LELQCNK YGVK+GDTCFAL   FK++TDHFNFINPNLNC+ LF+GQWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRVEGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVL

A0A7J6GVG8 LysM domain-containing protein2.0e-1469.23Show/hide
Query:  CNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLI
        C  VYGVK+GDTCFAL QKFK+TTD F  INPNLNC  LF+ QWLC+D  L+
Subjt:  CNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLI

A0A7J6HUD6 LysM domain-containing protein2.0e-1469.23Show/hide
Query:  CNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLI
        C  VYGVK+GDTCFAL QKFK+TTD F  INPNLNC  LF+ QWLC+D  L+
Subjt:  CNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLI

SwissProt top hitse value%identityAlignment
D4AVW3 LysM domain-containing protein ARB_003279.7e-0644.44Show/hide
Query:  GLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINP--NLNCTDLFIGQWLCL
        G    C + YGVK GD C  +  KF IT D+F F+NP  N NCT+L+  +  C+
Subjt:  GLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINP--NLNCTDLFIGQWLCL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGGCTATGATCTCCTCCTCATTTCCCATCTTCCTATTGGCTTTCTCTCTTCTCATTCTCTCTATTTCCGTCGAAACTCGGTCTACTCCCTTCCGTGTTGAAGG
GTTGGAGTTACAATGCAACAAAGTTTATGGAGTAAAGAATGGAGACACATGCTTTGCTCTTGAACAGAAATTTAAGATCACCACTGACCACTTCAATTTTATCAATCCAA
ATCTCAATTGCACCGATCTTTTTATTGGCCAATGGCTCTGTCTCGATGCTGTCCTTATCCTCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGGCTATGATCTCCTCCTCATTTCCCATCTTCCTATTGGCTTTCTCTCTTCTCATTCTCTCTATTTCCGTCGAAACTCGGTCTACTCCCTTCCGTGTTGAAGG
GTTGGAGTTACAATGCAACAAAGTTTATGGAGTAAAGAATGGAGACACATGCTTTGCTCTTGAACAGAAATTTAAGATCACCACTGACCACTTCAATTTTATCAATCCAA
ATCTCAATTGCACCGATCTTTTTATTGGCCAATGGCTCTGTCTCGATGCTGTCCTTATCCTCCCTTAA
Protein sequenceShow/hide protein sequence
MAKAMISSSFPIFLLAFSLLILSISVETRSTPFRVEGLELQCNKVYGVKNGDTCFALEQKFKITTDHFNFINPNLNCTDLFIGQWLCLDAVLILP