CuGenDBv2

Gene ID	PI0025978
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr04:20014399..20014803
RNA-Seq Expression	PI0025978
Synteny	PI0025978
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.3e-49

77.44

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Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PF+VAKNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMS+MVTDVDTSED+M EL+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+K VEERD+EIA LKNHIESRDAA+SSHT
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

1.9e-49

78.95

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Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PF+VAKNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMSVMVTDVDTSED+M EL+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+KAVEERD+EIA LKNHIESRDAA+SSHT
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.6e-49

78.2

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Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PFEV KNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMSVMVTDVDTSED+M EL+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+KAVEE+D+EIA LKNHIESRDAA+SSHT
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

KAA0060608.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.3e-49

77.44

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Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PFEVAKNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMS+MVTDVDTSED+MT+L+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+KAVEERD+EIA LKNHIES DAA+SSH+
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

TYK02263.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.3e-49

77.44

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Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PFEVAKNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMS+MVTDVDTSED+MT+L+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+KAVEERD+EIA LKNHIES DAA+SSH+
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKR0 Ty3-gypsy retrotransposon protein

3.6e-49

77.44

Show/hide

Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PF+VAKNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMS+MVTDVDTSED+M EL+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+K VEERD+EIA LKNHIESRDAA+SSHT
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

A0A5A7TZU9 Ribonuclease H

9.4e-50

78.95

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Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PF+VAKNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMSVMVTDVDTSED+M EL+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+KAVEERD+EIA LKNHIESRDAA+SSHT
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

A0A5A7U5H1 Ty3-gypsy retrotransposon protein

2.7e-49

78.2

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Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PFEV KNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMSVMVTDVDTSED+M EL+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+KAVEE+D+EIA LKNHIESRDAA+SSHT
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

A0A5A7UZD5 Ty3-gypsy retrotransposon protein

3.6e-49

77.44

Show/hide

Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PFEVAKNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMS+MVTDVDTSED+MT+L+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+KAVEERD+EIA LKNHIES DAA+SSH+
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

A0A5D3BRH6 Ty3-gypsy retrotransposon protein

3.6e-49

77.44

Show/hide

Query:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK
        S+GNT K LSDIGKR NT S SRE QSSEDM PFEVAKNIWE++SKPPKGGI+IKENP  DEH    ERS+EE+P PNIMS+MVTDVDTSED+MT+L+KK
Subjt:  SRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKK

Query:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT
        VNML+KAVEERD+EIA LKNHIES DAA+SSH+
Subjt:  VNMLLKAVEERDYEIASLKNHIESRDAAKSSHT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTAGAGGCAACACTTTCAAAACTCTAAGCGACATCGGTAAAAGGTCAAATACTCACAGCCACTCAAGGGAGGCCCAATCATCTGAGGATATGTTACCCTTTGAGGT
AGCAAAGAATATTTGGGAAGAGTTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGACTGATGAGCATGGTTTGTCCTTTGAACGCTCAAGTGAGG
AGATGCCTCACCCAAATATAATGTCGGTTATGGTAACTGATGTTGATACAAGTGAAGATAAAATGACGGAGCTTAAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAA
GAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGACGCTGCTAAATCAAGTCACACATAG

mRNA sequence

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Protein sequence

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MSRGNTFKTLSDIGKRSNTHSHSREAQSSEDMLPFEVAKNIWEELSKPPKGGIIIKENPVTDEHGLSFERSSEEMPHPNIMSVMVTDVDTSEDKMTELKKKVNMLLKAVE
ERDYEIASLKNHIESRDAAKSSHT

PI0025978 (gene) of Melon (PI 482460) v1 genome