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PI0026070 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026070
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:10416273..10417655
RNA-Seq ExpressionPI0026070
SyntenyPI0026070
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.7e-7055.88Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG
        MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++YIERLEDWDSKNHQII                    +   
Subjt:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG

Query:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR
        W                                              LDQAKIS DHIRLIKVLMGLRPEYE +RA LLHRNPLPSLD  VQEILFEEKR
Subjt:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR

Query:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
        L I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.8e-7156.25Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG
        MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++YIERLEDWDSKNHQII                    +   
Subjt:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG

Query:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR
        W                                              LDQAKIS DHIRLIKVLMGLRPEYES+RA LLHRNPLPSLD  VQEILFEEKR
Subjt:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR

Query:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
        L I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-7464.17Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQIIK--------SSHG-----------
        MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++YIERLEDWDSKNHQII           H            
Subjt:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQIIK--------SSHG-----------

Query:  ------------W--LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKL
                    W  LDQAKIS DHIRLIKVLMGLRPEYES+RA LLHRNPLPSLD  VQEILFEEKRL I SS+ S+ ALATTH R  NE IFCKNCKL
Subjt:  ------------W--LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKL

Query:  QGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
         GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  QGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]2.9e-7055.88Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG
        MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++YIERLEDWDSKNHQII                    +   
Subjt:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG

Query:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR
        W                                              L+QAKIS DHIRLIKVLMGLRPEYES+RA LLHRNPLPSLD  VQEILFEEKR
Subjt:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR

Query:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
        L I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]2.2e-7052.01Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMR--------------------RNATSSDTTKNADVDLPNTTIQETTTEDVKYIERLEDWDSKNHQII-------
        MEK ++ RPISTILDG+NYITWAHQMR                    +     DTT+N D D  + T+QETT E  KYIERLEDWDSKNHQII       
Subjt:  MEKSDITRPISTILDGSNYITWAHQMR--------------------RNATSSDTTKNADVDLPNTTIQETTTEDVKYIERLEDWDSKNHQII-------

Query:  ------------KSSHGW----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNP
                     +   W                                              LDQAKI+ +HIRLIKVLMGLRPEYES+RA LLHRNP
Subjt:  ------------KSSHGW----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNP

Query:  LPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKPINQGPHLPP
        LPSLD  +QEILFEE RL I SS+PS+ ALATTHSR  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP G  +KP +   +  P
Subjt:  LPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKPINQGPHLPP

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882001.4e-7055.88Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG
        MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++YIERLEDWDSKNHQII                    +   
Subjt:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG

Query:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR
        W                                              L+QAKIS DHIRLIKVLMGLRPEYES+RA LLHRNPLPSLD  VQEILFEEKR
Subjt:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR

Query:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
        L I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-7055.88Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG
        MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++YIERLEDWDSKNHQII                    +   
Subjt:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG

Query:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR
        W                                              LDQAKIS DHIRLIKVLMGLRPEYE +RA LLHRNPLPSLD  VQEILFEEKR
Subjt:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR

Query:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
        L I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

A0A5A7TPN5 Putative mitochondrial protein6.9e-7057.2Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMR---------RNATS------------SDTTKNADVDLPNTTIQETTTEDVKYIERLEDWDSKNHQIIKSSHGW
        MEK DI RPISTILDGSNYITWA+QMR         R  T              +T+KN        T  ETT ED KYIERLEDWDSKNHQII     W
Subjt:  MEKSDITRPISTILDGSNYITWAHQMR---------RNATS------------SDTTKNADVDLPNTTIQETTTEDVKYIERLEDWDSKNHQIIKSSHGW

Query:  ----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRL
                                                      LDQAKIS DHIRLIKVLMGLRPEYES+RA LLHRN LPSLD  VQEILFE+KRL
Subjt:  ----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRL

Query:  DISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
         + SS+P + ALATTH R  NE  FCKNCKL  HKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  DISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-7464.17Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQIIK--------SSHG-----------
        MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++YIERLEDWDSKNHQII           H            
Subjt:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQIIK--------SSHG-----------

Query:  ------------W--LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKL
                    W  LDQAKIS DHIRLIKVLMGLRPEYES+RA LLHRNPLPSLD  VQEILFEEKRL I SS+ S+ ALATTH R  NE IFCKNCKL
Subjt:  ------------W--LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKL

Query:  QGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
         GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  QGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-944.8e-7156.25Show/hide
Query:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG
        MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++YIERLEDWDSKNHQII                    +   
Subjt:  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHG

Query:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR
        W                                              LDQAKIS DHIRLIKVLMGLRPEYES+RA LLHRNPLPSLD  VQEILFEEKR
Subjt:  W----------------------------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKR

Query:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP
        L I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Subjt:  LDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAAACCCAAATCAGCCCCATTCATCACCAAAATCAGCCTCCTGATTTAGAATCAAACCCAGTCGTCCCACTCCTGTCGTCCGCCGAAAACCCACCGCCAAATCA
AACCCGTCTGCTGAAATATCCTCCGAAAACCCGTCCGCCAAATCAAATACCACCGCCAAATCAAACCCGTCCCTCTCCTCTCGCCCGCTTAATACAGATCCAATCCGTCG
AATATCCTTTGTTGCCGAATATCCCCTATTCGCGACTCTCTCCATCATCCGTTGTAACTTGTTGTACAGATCTGATGGAGAAGAGTGATATCACACGTCCTATTAGCACC
ATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGGAATGCCACCAGTTCGGACACCACTAAGAATGCTGATGTAGATCTCCCAAATACTACCATTCA
GGAGACTACTACCGAAGACGTCAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCAAATCATCACATGGTTGGTTAGATCAAGCAAAAATCA
GTCTTGACCATATCCGTCTCATCAAAGTACTTATGGGACTCCGTCCAGAGTATGAATCTATTCGGGCTGTCCTTTTACACCGCAACCCTCTACCATCACTTGACGTCGTC
GTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGACATTAGCTCCTCTATGCCCTCTAATGCTGCCCTCGCAACCACTCATTCACGACCTACTAATGAGTTCATCTTCTG
CAAAAATTGTAAACTCCAAGGACATAAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTACTGTCACAAGCGAGGTCACATCTTGGAAAACTGTCCAACTCGTCCACCTC
GCCCTCTTGGTCACTCACATAAACCCATAAATCAGGGTCCTCATCTGCCACCTCATCTGACACTACGCCATCTCCAAGTTTTCAGCTACATGATCTCCATGACTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAAACCCAAATCAGCCCCATTCATCACCAAAATCAGCCTCCTGATTTAGAATCAAACCCAGTCGTCCCACTCCTGTCGTCCGCCGAAAACCCACCGCCAAATCA
AACCCGTCTGCTGAAATATCCTCCGAAAACCCGTCCGCCAAATCAAATACCACCGCCAAATCAAACCCGTCCCTCTCCTCTCGCCCGCTTAATACAGATCCAATCCGTCG
AATATCCTTTGTTGCCGAATATCCCCTATTCGCGACTCTCTCCATCATCCGTTGTAACTTGTTGTACAGATCTGATGGAGAAGAGTGATATCACACGTCCTATTAGCACC
ATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGGAATGCCACCAGTTCGGACACCACTAAGAATGCTGATGTAGATCTCCCAAATACTACCATTCA
GGAGACTACTACCGAAGACGTCAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCAAATCATCACATGGTTGGTTAGATCAAGCAAAAATCA
GTCTTGACCATATCCGTCTCATCAAAGTACTTATGGGACTCCGTCCAGAGTATGAATCTATTCGGGCTGTCCTTTTACACCGCAACCCTCTACCATCACTTGACGTCGTC
GTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGACATTAGCTCCTCTATGCCCTCTAATGCTGCCCTCGCAACCACTCATTCACGACCTACTAATGAGTTCATCTTCTG
CAAAAATTGTAAACTCCAAGGACATAAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTACTGTCACAAGCGAGGTCACATCTTGGAAAACTGTCCAACTCGTCCACCTC
GCCCTCTTGGTCACTCACATAAACCCATAAATCAGGGTCCTCATCTGCCACCTCATCTGACACTACGCCATCTCCAAGTTTTCAGCTACATGATCTCCATGACTTACTGA
Protein sequenceShow/hide protein sequence
MNQTQISPIHHQNQPPDLESNPVVPLLSSAENPPPNQTRLLKYPPKTRPPNQIPPPNQTRPSPLARLIQIQSVEYPLLPNIPYSRLSPSSVVTCCTDLMEKSDITRPIST
ILDGSNYITWAHQMRRNATSSDTTKNADVDLPNTTIQETTTEDVKYIERLEDWDSKNHQIIKSSHGWLDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVV
VQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKPINQGPHLPPHLTLRHLQVFSYMISMTY