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PI0026125 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026125
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L6, putative
Genome locationchr08:21648393..21649520
RNA-Seq ExpressionPI0026125
SyntenyPI0026125
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON38569.1 Ribosomal protein [Parasponia andersonii]3.6e-4895.1Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_004143514.1 uncharacterized protein LOC101220210 [Cucumis sativus]3.3e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMY+DEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_008440709.1 PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo]1.2e-4897.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI K RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022158420.1 uncharacterized protein LOC111024915 [Momordica charantia]6.2e-4896.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYI+EVVK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]5.6e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

TrEMBL top hitse value%identityAlignment
A0A0A0KJ40 Ribosomal_L6 domain-containing protein1.6e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMY+DEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A1S3B2D0 60S ribosomal protein L6, mitochondrial6.0e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI K RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A5D3CL55 60S ribosomal protein L66.0e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI K RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1GFP3 uncharacterized protein LOC1114535102.7e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1IQJ4 uncharacterized protein LOC1114785182.7e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

SwissProt top hitse value%identityAlignment
B3WAK3 50S ribosomal protein L62.4e-1853.19Show/hide
Query:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        +K+VGVGY  RA+  G  L L +GYSH VE+T P  V V       +  +GI KQ V QFAA VRS + PE YKGKGI Y+DE V+RK+GK  K
Subjt:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

P26861 60S ribosomal protein L6, mitochondrial1.1e-3467Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N++CCTG+  Q+V QFAA V+SCKPPEVYKGKGI Y +E++ +KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Q034Z8 50S ribosomal protein L62.4e-1853.19Show/hide
Query:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        +K+VGVGY  RA+  G  L L +GYSH VE+T P  V V       +  +GI KQ V QFAA VRS + PE YKGKGI Y+DE V+RK+GK  K
Subjt:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

Q2JQN4 50S ribosomal protein L62.4e-1848.98Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GI K+ V   AA +R+ +PPE YKGKGI Y+ E V+RK GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

Q38US6 50S ribosomal protein L61.1e-1850Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI KQ+V QFAA +R  +PPE YKGKGI Y DE V+RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family3.2e-1844.9Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G  K  + QFAA VR  +PPE YKGKG+ Y DE+V+RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein9.2e-5092.16Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGI KQRVHQFAA VRSCKPPE YKGKGIMY DEVVK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGCCATGAAGT
TGAACTAACCGTTCCGCCAGCTGTTCGCGTTTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTCACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTA
GCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGCATCATGTATATCGATGAGGTCGTAAAGAGGAAACAAGGAAAGAAGTCTAAATAA
mRNA sequenceShow/hide mRNA sequence
CTCGAATTAGATCAATATAATTTTATAGGTTTAGTTTATAAATTCAATCCACTCGATGCTAACTAGTAACTATCATATCAGGGTTTTTTTTTAGTACATTATCATATCAG
GTTTTGAACCAATGATCTTGTGAGATTTCTAAGTAATTGCAACTATTTGCTGCCCATTCTTCTTGGCTCACCAAATTATAATTGGTGATTTATTTTTGAAGTACCAATCC
AATTACAGTTTTAATGTATACATACAAGCCTATTGACAATGAACTTTGCTGCTTGTTTAATGTTAACCATTCCTATCTCGTCTGTTTCCAACAAATTATGAAATATGATC
TATTAAATATCAATAGACTAAGTAGTTTGTGAATTTCATCTTAATAGGTAAGCAGGAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTA
CAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGCCATGAAGTTGAACTAACCGTTCCGCCAGCTGTTCGCGTTTTTTGCTTCAAAAACA
ATGTGGTATGTTGCACAGGGATTCACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGCATCATGTATATC
GATGAGGTCGTAAAGAGGAAACAAGGAAAGAAGTCTAAATAAGTTACCAGGAGCACAAAATTCTTCATTGATCTTTATTCAGACACAAAGTGCCTCAGTTACGAATAATT
GTTTTTGTTGTATGCATGTTTTTAGATCATTCCATGAATTAAGCCATGCGACTGAACTGTAATTGCTTCAATGCCTATTATTGAAATGCCATCTCATCGATCATTGATGT
TGAAGAATGTAGACCAAGCAGGAAAAAAGCTATTTGTGAGTTGAGGGTTGTTGACCGTTAACCTTTTTCTTTTTTTCATGTGAGATGGAGCCTCTGACCACGTTGATCAT
TGAGGTTCAACTCTTGAACTCTTGCTTGTATTATGAGTAGTAACGACCTCTTTTCTTCGCAAGATGTTTATGCCAATTTTCTCACGAACCTTTATTTAAAGTTTCAAACA
AAACAGCCCCTTCCTATTCCTGGCTTCA
Protein sequenceShow/hide protein sequence
MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK