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PI0026133 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026133
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr04:22096719..22097174
RNA-Seq ExpressionPI0026133
SyntenyPI0026133
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026242.1 gag/pol protein [Cucumis melo var. makuwa]5.0e-5474.83Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK ++LTG+NYA WKS LNMILVI DL FVL+EECPPF  +NASQ+VRDAYDRWTKANDKAR+YILASMS ILSKKHE       IMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        MFGQPSIQI+ EAIKYVYNARMKEG   REHV +M+V FNV + NGA+ DE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-5573.51Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK ++LTG NY TWKS LNMILVI DL  +LME+CPPFP +NASQ+V+DAYD WTK NDKAR+YIL SM DILSKKHE MVT RQIMDS++E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        MFGQPSIQI+ EAIKYVYN  MKE QS REHV DM+V FN+AE N  + DE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-6080.13Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK ++LTG+NYATWKS LNMILVI DL FVLMEECPPFP +NASQ+V+DAYD WTKANDKA +Y+LAS+SDILSKKHE MVT RQIMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQS REHV  M+V FNVAE N AI DE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-5777.48Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK E LTG+NYA WKS LNMILVI DL F+LMEECPPFP +NAS+++RDAY+R TKANDKA +YILASMSDILSKKHE MVT RQIMDS +E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        +F QPSIQI+ EAIKYVYNA MKEGQS REH  DM+V FNVAE NGA+IDE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-6080.13Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK ++LTG+NYATWKS LNMILVI DL FVLMEECPPFP +NASQ+V+DAYD WTKANDKA +Y+LAS+SDILSKKHE MVT RQIMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQS REHV  M+V FNVAE N AI DE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
TrEMBL top hitse value%identityAlignment
A0A5A7SM77 Gag/pol protein2.4e-5474.83Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK ++LTG+NYA WKS LNMILVI DL FVL+EECPPF  +NASQ+VRDAYDRWTKANDKAR+YILASMS ILSKKHE       IMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        MFGQPSIQI+ EAIKYVYNARMKEG   REHV +M+V FNV + NGA+ DE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
A0A5A7VA67 Gag/pol protein1.7e-6080.13Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK ++LTG+NYATWKS LNMILVI DL FVLMEECPPFP +NASQ+V+DAYD WTKANDKA +Y+LAS+SDILSKKHE MVT RQIMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQS REHV  M+V FNVAE N AI DE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
A0A5D3BM47 Gag/pol protein3.1e-5777.48Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK E LTG+NYA WKS LNMILVI DL F+LMEECPPFP +NAS+++RDAY+R TKANDKA +YILASMSDILSKKHE MVT RQIMDS +E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        +F QPSIQI+ EAIKYVYNA MKEGQS REH  DM+V FNVAE NGA+IDE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
A0A5D3D0D9 Gag/pol protein1.7e-6080.13Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK ++LTG+NYATWKS LNMILVI DL FVLMEECPPFP +NASQ+V+DAYD WTKANDKA +Y+LAS+SDILSKKHE MVT RQIMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQS REHV  M+V FNVAE N AI DE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
A0A5D3DQJ2 Gag/pol protein2.9e-5573.51Show/hide
Query:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE
        M SSIIALLK ++LTG NY TWKS LNMILVI DL  +LME+CPPFP +NASQ+V+DAYD WTK NDKAR+YIL SM DILSKKHE MVT RQIMDS++E
Subjt:  MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQE

Query:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
        MFGQPSIQI+ EAIKYVYN  MKE QS REHV DM+V FN+AE N  + DE
Subjt:  MFGQPSIQIQHEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTATGTTT
CGTCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACTGTCCGGGATGCATATGATCGCTGGACAAAGGCCAATGACAAAGCTCGAGTCTACATCT
TGGCCAGTATGTCTGACATACTGAGCAAGAAACATGAGTCCATGGTCACTACACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCATCCATTCAAATTCAG
CACGAGGCTATTAAGTATGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGGTAGAGAACATGTTTTCGACATGATGGTCCAATTCAACGTGGCAGAAACAAACGGGGC
GATCATTGACGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTATGTTT
CGTCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACTGTCCGGGATGCATATGATCGCTGGACAAAGGCCAATGACAAAGCTCGAGTCTACATCT
TGGCCAGTATGTCTGACATACTGAGCAAGAAACATGAGTCCATGGTCACTACACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCATCCATTCAAATTCAG
CACGAGGCTATTAAGTATGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGGTAGAGAACATGTTTTCGACATGATGGTCCAATTCAACGTGGCAGAAACAAACGGGGC
GATCATTGACGAGTAG
Protein sequenceShow/hide protein sequence
MFSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLCFVLMEECPPFPVRNASQTVRDAYDRWTKANDKARVYILASMSDILSKKHESMVTTRQIMDSLQEMFGQPSIQIQ
HEAIKYVYNARMKEGQSGREHVFDMMVQFNVAETNGAIIDE