CuGenDBv2

Gene ID	PI0026153
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr03:18708155..18710461
RNA-Seq Expression	PI0026153
Synteny	PI0026153
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006281 - DNA repair (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0008622 - epsilon DNA polymerase complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

ADN34181.1 retrotransposon protein, partial [Cucumis melo subsp. melo]

4.6e-32

72.92

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  DEVNWFRWSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

KAA0040609.1 DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa]

6.7e-31

70.83

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  +EVNWF WSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

KAA0066550.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.1e-32

72.92

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  DEVNWFRWSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

TYJ98044.1 retrotransposon protein [Cucumis melo var. makuwa]

4.6e-32

72.92

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  DEVNWFRWSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

TYK27437.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.6e-32

72.92

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  DEVNWFRWSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TH70 DNA polymerase epsilon catalytic subunit

3.2e-31

70.83

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  +EVNWF WSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

A0A5A7VHA7 Ty3/gypsy retrotransposon protein

2.9e-32

72.92

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  DEVNWFRWSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

A0A5D3BG44 Retrotransposon protein

2.2e-32

72.92

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  DEVNWFRWSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein

2.2e-32

72.92

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  DEVNWFRWSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

E5GCI2 Retrotransposon protein (Fragment)

2.2e-32

72.92

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Query:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV
        L   EKVK  +VSF  DEVNWFRWSNN+KK+  WEDLK +MFEHF+  GEGSLGARLIRIKQDG Y++Y KKFL YSAPLPEMAESVL+DAF  G+
Subjt:  LAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARLIRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCCAATTGTCGACAGGTTGATCAAGTGGGTGGTGATTGGAACGAACAAATGCACGAGGCGGAGGAAATCGTCGTCCTCTCTCCAAGGACTTTGTCAAGGCACTTGCA
GTCTGTCGAAGCTTCTTTGGAGAGAATTGAAAAGACACTTAACGAGATTCTTCAGAGATTGGAAGCTGTAGCTCCACACCAAGAAATTTGTCAAGAAGTTTTGACGAACG
TTCAACAGTGGGAGCGACAAGGCATTCGAGCTGGGCTACAGAGACCAGGGAGAAATCTTCAAGAAAGGGGACTCGGCATTAATGATCATAGAAGAAACAATCAAGAACCT
CAAGAACCATGCACCGATTTCAAGATTGCAATCAAGAATTCCAAGATTGGAGTTCTTCGAATGAGGAGGATCAAGGGGAAGAGTTTGGTGGCTACGGTAGAGGGAGGTCA
TACATTGGCTGAATACATAGAGGAATTCCACCGGTTGGGAGCACAGACAAATCTAATGGGAAATGATAGATTCGTTGGAGGTTTACGATATGATATCAAAGAGAAGGTCA
AACTCCAGCCCTTTTTGTCTTTATCAAAAGCCATCACCTATACAGAATCAGTTGAGGAATTAATTGAGTTCAACTCAAGAAGGATAGCAAGGCGTAGTCCTTGGGATAAC
TCGAGCAACTGCAAATCTACCTCAGTTGTGAATAGTAATAGCCAATCTCAACCCTTGAAAGATAAAGACAAAGAAAAACCCTTTGAACAGAATGGAAAAAAGTTTGAGTT
GCCACTAAAAAAGCAAGTCAAAAACCCCTATCAACGTCCCAATCTAAATTTAGCCAAAGCTGAGAAAGTCAAGGCCACTCTCGTGAGTTTTTCGCATGATGAAGTTAATT
GGTTCAGGTGGAGCAATAACCAGAAGAAGTTAACATTGTGGGAGGATCTCAAAAATCAGATGTTCGAACATTTTCAACACATTGGGGAAGGGAGCTTAGGAGCTAGGCTG
ATAAGAATCAAACAGGATGGAACATATGCTGAATATTCGAAGAAGTTTCTGAACTACTCCGCACCATTGCCGGAGATGGCAGAGAGTGTGTTGATGGATGCATTTTGTGA
CGGGGTTGGAATTGGAACTATGTATGGAGGTTGTTAG

mRNA sequence

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Protein sequence

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MANCRQVDQVGGDWNEQMHEAEEIVVLSPRTLSRHLQSVEASLERIEKTLNEILQRLEAVAPHQEICQEVLTNVQQWERQGIRAGLQRPGRNLQERGLGINDHRRNNQEP
QEPCTDFKIAIKNSKIGVLRMRRIKGKSLVATVEGGHTLAEYIEEFHRLGAQTNLMGNDRFVGGLRYDIKEKVKLQPFLSLSKAITYTESVEELIEFNSRRIARRSPWDN
SSNCKSTSVVNSNSQSQPLKDKDKEKPFEQNGKKFELPLKKQVKNPYQRPNLNLAKAEKVKATLVSFSHDEVNWFRWSNNQKKLTLWEDLKNQMFEHFQHIGEGSLGARL
IRIKQDGTYAEYSKKFLNYSAPLPEMAESVLMDAFCDGVGIGTMYGGC

PI0026153 (gene) of Melon (PI 482460) v1 genome