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PI0026186 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026186
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr05:14845662..14846117
RNA-Seq ExpressionPI0026186
SyntenyPI0026186
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.7e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

A0A5A7TU93 Gag/pol protein2.7e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

A0A5A7TWB9 Gag/pol protein2.7e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

A0A5A7V4M1 Gag/pol protein2.7e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

A0A5D3CPJ6 Gag/pol protein2.7e-5378.29Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG  VREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMN
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS
        KI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+S TKS PS
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSRTKSAPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAATCGTCCATTCAAATCCGGCACGAGGC
TATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATTTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTG
ACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACCACCCTCCTT
AACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAAAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTAGAACCAA
GTCTGCACCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAATCGTCCATTCAAATCCGGCACGAGGC
TATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATTTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTG
ACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACCACCCTCCTT
AACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAAAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTAGAACCAA
GTCTGCACCTTCATGA
Protein sequenceShow/hide protein sequence
MSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQFVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLL
NELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSRTKSAPS