CuGenDBv2

Gene ID	PI0026200
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA ligase 1
Genome location	chr01:24500005..24502917
RNA-Seq Expression	PI0026200
Synteny	PI0026200
Gene Ontology terms	NA
InterPro domains	IPR013730 - Fyv7/TAP26

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593160.1 hypothetical protein SDJN03_12636, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-77

88.11

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        K E++ RSKSK MK NKHKN+KRLGGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQN QNERPSSS+VGLVEGENE  FENQTN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY
        GR G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKA+RNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS N+
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

XP_004136058.2 uncharacterized protein LOC101216293 [Cucumis sativus]

2.6e-84

94.05

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        KHE  NRSKSK M NNKH NIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQ NERPSSSTV LVEGENETKFENQTN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY
         RCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKA+RNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN+
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

XP_008451439.1 PREDICTED: uncharacterized protein LOC103492733 [Cucumis melo]

6.1e-86

95.14

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        KHE KNRSKSK M  NKH NIKRLGGK LSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY
        GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKA+RNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN+
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

XP_022960530.1 uncharacterized protein LOC111461241 [Cucurbita moschata]

1.1e-77

88.11

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        K E++ RSKSK MK NKHKN+KRLGGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQN QNERPSSS+VGLVEGENE KFEN+TN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY
        GR G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKA+RNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS N+
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

XP_038876713.1 uncharacterized protein LOC120069103 [Benincasa hispida]

2.5e-79

90.71

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        K ED+NRS SK MK+ KHKN+KRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVK+QNQQNERPSSSTVGLVE ENETKFEN TN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAST
        GR GKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKA+RN+TREKMFKRTQKGQPVMKYRIEHLLETIG ++
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAST

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7L3 Uncharacterized protein

1.3e-84

94.05

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        KHE  NRSKSK M NNKH NIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQ NERPSSSTV LVEGENETKFENQTN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY
         RCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKA+RNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN+
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

A0A1S3BRH3 uncharacterized protein LOC103492733

3.0e-86

95.14

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        KHE KNRSKSK M  NKH NIKRLGGK LSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY
        GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKA+RNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN+
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

A0A6J1GP14 uncharacterized protein LOC111455827

9.6e-77

88.46

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Query:  EDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTNGR
        E +NR KS  MKN KHKN+KRLGGKGLSLEAFAN KSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQN  NERPSSSTVGLVEGEN TK ENQTNGR
Subjt:  EDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTNGR

Query:  CGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN
         GKERNKG+PSLQ LYERKHEEKEKARMEKEAIIAAKKEEQERAKA+RN+TREKM KRTQKGQPVMKYRIEHLL+TIGAS N
Subjt:  CGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN

A0A6J1H9B9 uncharacterized protein LOC111461241

5.1e-78

88.11

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        K E++ RSKSK MK NKHKN+KRLGGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQN QNERPSSS+VGLVEGENE KFEN+TN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY
        GR G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKA+RNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS N+
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

A0A6J1KV89 uncharacterized protein LOC111497895

3.3e-77

87.03

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        K E++ RSKSK  K NKHKN+KRLGGKG S +AFANAKSTTDYYNPA IKKQREFYKNAKHVNKYKKLVKHQN QNERPS+STVGLVEGENE KFEN+TN
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY
        GR G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKA+RNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS N+
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G03180.1 CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).

1.6e-31

44.51

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Query:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN
        ++ D    KSK  +  K KN++RLGG GLSL+ FAN KS  + YNP+LIKKQ+EFYKNAK+V+K++K +K QN  ++  +  T  + + +++ K + ++N
Subjt:  KHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTN

Query:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS
         R G         ++ LY++  EE E+ R E+EA+  AKKE +E A+++R   + KM ++T+ GQPVMKYRIEHLLE+I  S
Subjt:  GRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS

Sequences

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CDS sequence

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ATGAAGAAACACGAAGATAAGAATCGCTCCAAATCGAAACTCATGAAGAACAACAAACACAAGAACATTAAACGGTTGGGAGGGAAGGGCCTTTCCCTTGAGGCATTCGC
GAATGCTAAATCAACTACCGATTACTATAATCCAGCTTTGATAAAAAAGCAGAGAGAGTTCTATAAGAATGCTAAACATGTCAACAAGTATAAGAAGTTAGTAAAGCATC
AAAATCAACAGAATGAGAGGCCTTCTAGCTCTACTGTTGGACTCGTCGAGGGTGAAAATGAAACAAAATTCGAGAATCAGACGAACGGTAGATGTGGGAAAGAAAGGAAT
AAAGGCGTACCTAGTCTTCAAGCACTGTATGAGAGAAAGCATGAAGAGAAAGAGAAAGCAAGAATGGAGAAAGAAGCCATTATCGCTGCGAAAAAGGAAGAACAAGAAAG
GGCTAAGGCTAAACGAAACTCCACAAGAGAAAAAATGTTCAAAAGGACACAAAAAGGTCAGCCAGTTATGAAGTACAGAATTGAGCATCTTTTGGAGACTATTGGAGCCT
CAACGAACTACTAA

mRNA sequence

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Protein sequence

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MKKHEDKNRSKSKLMKNNKHKNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQQNERPSSSTVGLVEGENETKFENQTNGRCGKERN
KGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKAKRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNY

PI0026200 (gene) of Melon (PI 482460) v1 genome