CuGenDBv2

Gene ID	PI0026204
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Genome location	chr08:15735535..15735957
RNA-Seq Expression	PI0026204
Synteny	PI0026204
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]

1.3e-48

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRPEI TVLSGI KI AD LT LEEYLNSYLKRV++FNDVQSSYSAQL  TDK RQL+EKTSAIKEA TL+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        E+KELE RLQSI+ ESEQLSILSCEK EAID++ELE+A+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

KAA0060431.1 hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa]

6.9e-50

81.43

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRPEIATVLSGI KI  + LTPLEEYLNSYLKRV++FNDVQSSYSAQLL TDK RQLDEKTSAI+EA TLM++L+EDA VIQERA QLSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        EKKELE RLQS++ ESEQLSILSCEK EAI ++ELE+A+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

KAA0065375.1 hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]

7.7e-49

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRPEIATVLSGI KI AD LT LEEYLNSYLKRV++FNDVQSSYSAQLL TDK RQL+EKTSAIKE  TL+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ELE+A+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

TYK03767.1 hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa]

7.7e-49

80.71

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRT FEYIPRLRPEIATVLSGI KI AD LT LEEYLNSYLKRV++FNDVQSSYSAQLL TDK RQL+EKTSAIKEA TL+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        E+KELE RLQSI+ ESEQLSILSCEK EAID++ELE+A+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

TYK06376.1 hypothetical protein E5676_scaffold163G00680 [Cucumis melo var. makuwa]

7.7e-49

79.29

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRPEIATVLSGI KI AD+LTPLEEYLNSYLKRV++FNDVQSSY AQLL TDK RQL+EKTS IKEA TL++QL+ED KVIQER  +LSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        E+KEL+ RLQSI+ ESEQLSILSCEK EAID++EL+I +L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TX42 Uncharacterized protein

6.3e-49

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRPEI TVLSGI KI AD LT LEEYLNSYLKRV++FNDVQSSYSAQL  TDK RQL+EKTSAIKEA TL+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        E+KELE RLQSI+ ESEQLSILSCEK EAID++ELE+A+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

A0A5A7V3X5 PMD domain-containing protein

3.4e-50

81.43

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRPEIATVLSGI KI  + LTPLEEYLNSYLKRV++FNDVQSSYSAQLL TDK RQLDEKTSAI+EA TLM++L+EDA VIQERA QLSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        EKKELE RLQS++ ESEQLSILSCEK EAI ++ELE+A+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

A0A5A7VHW8 PMD domain-containing protein

3.7e-49

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRPEIATVLSGI KI AD LT LEEYLNSYLKRV++FNDVQSSYSAQLL TDK RQL+EKTSAIKE  TL+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ELE+A+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

A0A5D3BW91 Uncharacterized protein

3.7e-49

80.71

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRT FEYIPRLRPEIATVLSGI KI AD LT LEEYLNSYLKRV++FNDVQSSYSAQLL TDK RQL+EKTSAIKEA TL+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        E+KELE RLQSI+ ESEQLSILSCEK EAID++ELE+A+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

A0A5D3C7S4 Uncharacterized protein

3.7e-49

79.29

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Query:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRPEIATVLSGI KI AD+LTPLEEYLNSYLKRV++FNDVQSSY AQLL TDK RQL+EKTS IKEA TL++QL+ED KVIQER  +LSL
Subjt:  MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL
        E+KEL+ RLQSI+ ESEQLSILSCEK EAID++EL+I +L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKELEIAQL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCGCACTCCTTTTGAATATATCCCAAGGCTTAGGCCAGAAATAGCAACGGTTCTTTCAGGAATTGCAAAGATTCAAGCAGACAACTTGACTCCTCTTGAAGAATATTT
GAATAGCTACCTTAAGAGGGTAAACAGCTTTAATGATGTACAATCTTCATATTCCGCACAACTGCTGTTGACGGATAAAACTCGTCAATTGGACGAGAAGACATCTGCCA
TCAAAGAAGCCTCGACTTTGATGGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGCTACACAATTATCCTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAG
AGTATACATACTGAGTCTGAACAACTATCCATCTTATCTTGTGAGAAAAATGAGGCCATAGATAAGAAGGAATTGGAGATTGCTCAGCTCTAG

mRNA sequence

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Protein sequence

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MRTPFEYIPRLRPEIATVLSGIAKIQADNLTPLEEYLNSYLKRVNSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEASTLMDQLQEDAKVIQERATQLSLEKKELESRLQ
SIHTESEQLSILSCEKNEAIDKKELEIAQL

PI0026204 (gene) of Melon (PI 482460) v1 genome