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PI0026212 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026212
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr08:156701..157177
RNA-Seq ExpressionPI0026212
SyntenyPI0026212
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037793.1 uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa]4.6e-5072.08Show/hide
Query:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT
        EV L+ REDN QLKS   T KEL +  GT +SGK E STST KS+IL DEKTSNP +L YVP SR KKGESPFVE P+GLKVGD  +LKESF+TPLTKIT
Subjt:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT

Query:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFEL
        KQEIK+D+TEA+LPQR+ KDGFDPKAYKLMAKA YDF THT+F++LKI+EQ +L
Subjt:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFEL

KAA0051453.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]2.1e-5070.97Show/hide
Query:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT
        EV L+ REDN QLKS A   +E  +  G  +S K E STSTTKS+IL DEKT+NP +LCYVP SRRKKGESPFVE P+GLKVGD  +LKE F+TPLTKIT
Subjt:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT

Query:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS
        KQEIK+D+TEA+LPQRRMKDGFDPKAYKLMAK  YDFTTH +F++LKI+EQ +LS
Subjt:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS

KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]7.1e-5172.9Show/hide
Query:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT
        EV L+ REDN QLKS A   KE  +  GT +SGK E ST+T KS+IL DEKTSNP +L YVP SRRKKGESPFVE P+GLKVG+  +LKESF+TPLTKIT
Subjt:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT

Query:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS
        KQEIK+D+TEA+LPQRR KDGFDPKAYKLMAKA YDFTTHT+F++LKIYEQ +LS
Subjt:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS

TYK02888.1 uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa]1.3e-4972.08Show/hide
Query:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT
        EV L+ REDN QLKS   T KEL +  GT +SGK E STST KS+IL DEKTSNP +L YVP SR KKGESPFVE P+GLKVGD  ILKE F+TPLTKIT
Subjt:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT

Query:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFEL
        KQEIK+D+TEA+LPQR+ KDGFDPKAYKLMAKA YDF THT+F++LKI+EQ +L
Subjt:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFEL

TYK21493.1 uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa]3.0e-4970.89Show/hide
Query:  MPAEVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLT
        +P E+ L+ REDN QLKS   T KE  +  GT NSGKGE STSTTKSMIL  EKTSNP +L YVP SRRKKGESPFVE P+GLKVGD  +LKESF+  LT
Subjt:  MPAEVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLT

Query:  KITKQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS
        KITKQE K+D T+A+LPQR+ KDGFDPKAYKLMAKA YDFT HT+F++LKI EQ ELS
Subjt:  KITKQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS

TrEMBL top hitse value%identityAlignment
A0A5A7T485 Reverse transcriptase2.2e-5072.08Show/hide
Query:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT
        EV L+ REDN QLKS   T KEL +  GT +SGK E STST KS+IL DEKTSNP +L YVP SR KKGESPFVE P+GLKVGD  +LKESF+TPLTKIT
Subjt:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT

Query:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFEL
        KQEIK+D+TEA+LPQR+ KDGFDPKAYKLMAKA YDF THT+F++LKI+EQ +L
Subjt:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFEL

A0A5A7TH79 Gypsy-like retrotransposase1.4e-4971.15Show/hide
Query:  AEVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKI
        AEV L+ REDN QLKS A   +E  +  GT +SG+ E STSTTKS+IL DEKTSNP +L YVP SRRKKGESPFVE P+GLKVGD  +LKESF+TPLTKI
Subjt:  AEVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKI

Query:  TKQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS
        TKQ IK+D+ EA+LPQRR KDGFDPKAYKLMAKA YDFTTHT+ ++LKI+EQ +LS
Subjt:  TKQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS

A0A5A7U6D2 Gypsy-like retrotransposase1.0e-5070.97Show/hide
Query:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT
        EV L+ REDN QLKS A   +E  +  G  +S K E STSTTKS+IL DEKT+NP +LCYVP SRRKKGESPFVE P+GLKVGD  +LKE F+TPLTKIT
Subjt:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT

Query:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS
        KQEIK+D+TEA+LPQRRMKDGFDPKAYKLMAK  YDFTTH +F++LKI+EQ +LS
Subjt:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS

A0A5A7UD46 Uncharacterized protein3.4e-5172.9Show/hide
Query:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT
        EV L+ REDN QLKS A   KE  +  GT +SGK E ST+T KS+IL DEKTSNP +L YVP SRRKKGESPFVE P+GLKVG+  +LKESF+TPLTKIT
Subjt:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT

Query:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS
        KQEIK+D+TEA+LPQRR KDGFDPKAYKLMAKA YDFTTHT+F++LKIYEQ +LS
Subjt:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS

A0A5D3BV77 Reverse transcriptase6.5e-5072.08Show/hide
Query:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT
        EV L+ REDN QLKS   T KEL +  GT +SGK E STST KS+IL DEKTSNP +L YVP SR KKGESPFVE P+GLKVGD  ILKE F+TPLTKIT
Subjt:  EVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKIT

Query:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFEL
        KQEIK+D+TEA+LPQR+ KDGFDPKAYKLMAKA YDF THT+F++LKI+EQ +L
Subjt:  KQEIKLDMTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCAGAAGTTTCCCTGATAAAAAGAGAAGATAATCCACAATTGAAGTCACCTGCAAGAACAAGAAAAGAACTACGTGAAGGAGAAGGTACCTCTAACTCTGGAAA
GGGCGAGACATCCACTAGCACCACAAAGAGCATGATCTTAAGAGATGAAAAGACTTCAAACCCTCTAGTCTTGTGCTATGTCCCTCAGTCGAGGCGTAAGAAAGGGGAGT
CACCGTTCGTGGAGTGCCCAAAAGGCTTGAAGGTTGGTGATGCTGGAATCTTGAAAGAAAGCTTCTCTACACCGTTAACTAAGATAACGAAGCAAGAGATAAAGTTAGAC
ATGACAGAAGCAAACTTGCCTCAAAGGCGGATGAAAGACGGATTTGACCCCAAGGCTTACAAATTGATGGCGAAAGCAGATTATGACTTCACGACTCACACCAAGTTCGA
AAACTTGAAAATTTATGAACAATTCGAGCTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGCAGAAGTTTCCCTGATAAAAAGAGAAGATAATCCACAATTGAAGTCACCTGCAAGAACAAGAAAAGAACTACGTGAAGGAGAAGGTACCTCTAACTCTGGAAA
GGGCGAGACATCCACTAGCACCACAAAGAGCATGATCTTAAGAGATGAAAAGACTTCAAACCCTCTAGTCTTGTGCTATGTCCCTCAGTCGAGGCGTAAGAAAGGGGAGT
CACCGTTCGTGGAGTGCCCAAAAGGCTTGAAGGTTGGTGATGCTGGAATCTTGAAAGAAAGCTTCTCTACACCGTTAACTAAGATAACGAAGCAAGAGATAAAGTTAGAC
ATGACAGAAGCAAACTTGCCTCAAAGGCGGATGAAAGACGGATTTGACCCCAAGGCTTACAAATTGATGGCGAAAGCAGATTATGACTTCACGACTCACACCAAGTTCGA
AAACTTGAAAATTTATGAACAATTCGAGCTTTCTTAA
Protein sequenceShow/hide protein sequence
MPAEVSLIKREDNPQLKSPARTRKELREGEGTSNSGKGETSTSTTKSMILRDEKTSNPLVLCYVPQSRRKKGESPFVECPKGLKVGDAGILKESFSTPLTKITKQEIKLD
MTEANLPQRRMKDGFDPKAYKLMAKADYDFTTHTKFENLKIYEQFELS