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PI0026243 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026243
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:9887798..9889821
RNA-Seq ExpressionPI0026243
SyntenyPI0026243
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039099.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-4962.22Show/hide
Query:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE
        MW PKP +GK+                      +  EE+ EV ACHA SI EVD+N+ SSKEV+NS +I Q   VFD IKPST  SSVFQRLSMA KEEE
Subjt:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE

Query:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN
         QCP F  TRTS FK LSISTSK D+PSTSAFD LKM +DQ  REMK+ K KPFHEEN+D+KIHSC PSRMKRK+SVDIN
Subjt:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN

KAA0051228.1 hypothetical protein E6C27_scaffold1250G00350 [Cucumis melo var. makuwa]5.0e-4960.99Show/hide
Query:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE
        MWKPKP +GKN                      +  EE+ EV ACH  SI EVDNN+ S +E+DNS +IKQ   +FDHIKP T  SSVFQRLSMA KEEE
Subjt:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE

Query:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDINIK
         QCP  T  RTSAFKRLSISTSK  +PSTS FD LKM +DQ +REMK+LK KPFHEEN+D+KIHS  PSRMKRK+S+DIN K
Subjt:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDINIK

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-4962.22Show/hide
Query:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE
        MW PKP +GK+                      +  EE+ EV ACHA SI EVDNN+ SSKEV+NS +I Q   VFD IKPST  SSVFQRLSM  KEEE
Subjt:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE

Query:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN
         QCP F  TRTS FKRLSISTSK D+PSTS FD LKM  DQ +REMK+LK KPF EEN+D+KIHSC PSRMKRK+SVDIN
Subjt:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.7e-5063.54Show/hide
Query:  MWKPKPARGKNMKTFPNL------------------DEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEE
        MW PKP +GK+ + F  L                   EE+ EV ACHA SI EVDNN+ SSKEV+NS +I Q   VFD IKPST  SSVFQRLSMA KEE
Subjt:  MWKPKPARGKNMKTFPNL------------------DEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEE

Query:  EKQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN
        E QCP F  TRTS FKRLSISTSK D+PSTSAFD LKM +DQ +REMK+ K KPF EEN+D+KIHSC PSRMKRK+SVDIN
Subjt:  EKQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN

TYK14888.1 gag protease polyprotein [Cucumis melo var. makuwa]7.7e-5062.78Show/hide
Query:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE
        MW PKP +GK+                      +  EE+ EV ACHA SI EVDNN+ SSKEV+NS +I Q   VFD IKPST  SSVFQRLSMA KEEE
Subjt:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE

Query:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN
         QCP F  TRTS FKRLSISTSK D+PSTSAFD LKM +DQ +REMK+ K KPF EEN+D+KIHSC PSRMKRK+SVDIN
Subjt:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN

TrEMBL top hitse value%identityAlignment
A0A5A7TCU4 Retrotransposon gag protein1.9e-4962.22Show/hide
Query:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE
        MW PKP +GK+                      +  EE+ EV ACHA SI EVD+N+ SSKEV+NS +I Q   VFD IKPST  SSVFQRLSMA KEEE
Subjt:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE

Query:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN
         QCP F  TRTS FK LSISTSK D+PSTSAFD LKM +DQ  REMK+ K KPFHEEN+D+KIHSC PSRMKRK+SVDIN
Subjt:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN

A0A5A7U7F9 Uncharacterized protein2.4e-4960.99Show/hide
Query:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE
        MWKPKP +GKN                      +  EE+ EV ACH  SI EVDNN+ S +E+DNS +IKQ   +FDHIKP T  SSVFQRLSMA KEEE
Subjt:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE

Query:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDINIK
         QCP  T  RTSAFKRLSISTSK  +PSTS FD LKM +DQ +REMK+LK KPFHEEN+D+KIHS  PSRMKRK+S+DIN K
Subjt:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDINIK

A0A5A7V7A0 Retrotransposon gag protein2.4e-4962.22Show/hide
Query:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE
        MW PKP +GK+                      +  EE+ EV ACHA SI EVDNN+ SSKEV+NS +I Q   VFD IKPST  SSVFQRLSM  KEEE
Subjt:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE

Query:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN
         QCP F  TRTS FKRLSISTSK D+PSTS FD LKM  DQ +REMK+LK KPF EEN+D+KIHSC PSRMKRK+SVDIN
Subjt:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN

A0A5D3CD55 Ty3-gypsy retrotransposon protein3.7e-5063.54Show/hide
Query:  MWKPKPARGKNMKTFPNL------------------DEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEE
        MW PKP +GK+ + F  L                   EE+ EV ACHA SI EVDNN+ SSKEV+NS +I Q   VFD IKPST  SSVFQRLSMA KEE
Subjt:  MWKPKPARGKNMKTFPNL------------------DEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEE

Query:  EKQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN
        E QCP F  TRTS FKRLSISTSK D+PSTSAFD LKM +DQ +REMK+ K KPF EEN+D+KIHSC PSRMKRK+SVDIN
Subjt:  EKQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN

A0A5D3CUI5 Gag protease polyprotein3.7e-5062.78Show/hide
Query:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE
        MW PKP +GK+                      +  EE+ EV ACHA SI EVDNN+ SSKEV+NS +I Q   VFD IKPST  SSVFQRLSMA KEEE
Subjt:  MWKPKPARGKN-----------------MKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEE

Query:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN
         QCP F  TRTS FKRLSISTSK D+PSTSAFD LKM +DQ +REMK+ K KPF EEN+D+KIHSC PSRMKRK+SVDIN
Subjt:  KQCPMFTSTRTSAFKRLSISTSKNDQPSTSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAGCCTAAACCAGCCAGAGGAAAAAACATGAAGACTTTCCCTAACCTCGACGAGGAAGTAAAAGAAGTCATTGCATGTCATGCTGTTAGCATAGCAGAAGTCGA
CAACAATCATGCATCTTCTAAAGAAGTCGACAATTCAAAGAAAATCAAGCAAATGCTTTTTGTCTTTGATCATATCAAGCCTTCGACTGCTGAATCTTCAGTCTTTCAAA
GGTTGAGTATGGCTGCAAAAGAAGAAGAAAAGCAATGTCCAATGTTTACTTCCACTCGAACTTCAGCTTTTAAAAGGCTAAGTATCTCCACATCAAAGAATGATCAACCT
TCAACATCTGCTTTTGATTGTCTAAAGATGGCAAGCGATCAACATGAAAGAGAGATGAAAACTTTGAAGGTAAAACCATTTCATGAAGAAAACAATGACGAGAAGATTCA
CAGTTGTGGTCCATCACGTATGAAGAGGAAGATGTCTGTTGACATAAATATCAAAGAGACTAATGAGGTGCTCCACCACTCCAAGATGATGGTGGTGCAACTCCGCGTCT
CCAAAATGATGGTAGTGCAGCTCTTGCCTCTTCATGATGGTGGTCTTCAAGATGGTAGTGGTGCAACTCTGCCTCTACAAGATGATGACAATGGTGTGACTCCGGCTCCG
CCTCTCCAAGAAAATGATGGTGCTCCGCCTCTCCAAGATGATGACAATGGTGCAATTCTGCCTTTACCTCTCCAAGATGATGGTGCAGCTTCGCCTCCACCTCTCCAAGA
TGACGGTGGTGCAACTCCTCCTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAGCCTAAACCAGCCAGAGGAAAAAACATGAAGACTTTCCCTAACCTCGACGAGGAAGTAAAAGAAGTCATTGCATGTCATGCTGTTAGCATAGCAGAAGTCGA
CAACAATCATGCATCTTCTAAAGAAGTCGACAATTCAAAGAAAATCAAGCAAATGCTTTTTGTCTTTGATCATATCAAGCCTTCGACTGCTGAATCTTCAGTCTTTCAAA
GGTTGAGTATGGCTGCAAAAGAAGAAGAAAAGCAATGTCCAATGTTTACTTCCACTCGAACTTCAGCTTTTAAAAGGCTAAGTATCTCCACATCAAAGAATGATCAACCT
TCAACATCTGCTTTTGATTGTCTAAAGATGGCAAGCGATCAACATGAAAGAGAGATGAAAACTTTGAAGGTAAAACCATTTCATGAAGAAAACAATGACGAGAAGATTCA
CAGTTGTGGTCCATCACGTATGAAGAGGAAGATGTCTGTTGACATAAATATCAAAGAGACTAATGAGGTGCTCCACCACTCCAAGATGATGGTGGTGCAACTCCGCGTCT
CCAAAATGATGGTAGTGCAGCTCTTGCCTCTTCATGATGGTGGTCTTCAAGATGGTAGTGGTGCAACTCTGCCTCTACAAGATGATGACAATGGTGTGACTCCGGCTCCG
CCTCTCCAAGAAAATGATGGTGCTCCGCCTCTCCAAGATGATGACAATGGTGCAATTCTGCCTTTACCTCTCCAAGATGATGGTGCAGCTTCGCCTCCACCTCTCCAAGA
TGACGGTGGTGCAACTCCTCCTCTCTAA
Protein sequenceShow/hide protein sequence
MWKPKPARGKNMKTFPNLDEEVKEVIACHAVSIAEVDNNHASSKEVDNSKKIKQMLFVFDHIKPSTAESSVFQRLSMAAKEEEKQCPMFTSTRTSAFKRLSISTSKNDQP
STSAFDCLKMASDQHEREMKTLKVKPFHEENNDEKIHSCGPSRMKRKMSVDINIKETNEVLHHSKMMVVQLRVSKMMVVQLLPLHDGGLQDGSGATLPLQDDDNGVTPAP
PLQENDGAPPLQDDDNGAILPLPLQDDGAASPPPLQDDGGATPPL