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PI0026280 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026280
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationchr02:16490247..16491838
RNA-Seq ExpressionPI0026280
SyntenyPI0026280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041704.1 uncharacterized protein E6C27_scaffold67G00370 [Cucumis melo var. makuwa]3.0e-2259Show/hide
Query:  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD
        ++LESL+T EEHDK NE IDQ  LEYV+NEFAKN+ S+DD SIFLDF   VN EH LV+  A NG H  +ND A +NEH LG+N++ D+E  L+ IDI++
Subjt:  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD

KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]5.2e-3854.05Show/hide
Query:  MGGFRRNDPQSISYNSRWRDHPNLREGPQEPKPTNTSSSSSSSQ--------------------------------ESLESLETLEEHDKINEFIDQAIL
        M GFRRND  S +YNS WRDHPNLR GPQEPKPTNTSSSSSSSQ                                ++LESL+ LEEHDK NE IDQA L
Subjt:  MGGFRRNDPQSISYNSRWRDHPNLREGPQEPKPTNTSSSSSSSQ--------------------------------ESLESLETLEEHDKINEFIDQAIL

Query:  EYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQDIDFHSK
        E+V+NEFAKN+PS+DDLSIFLDFV  VN E+VLV+  A N +HV  ND   +NEH  G+N+  D E IL+ I I++  D   H K
Subjt:  EYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQDIDFHSK

KAA0050551.1 uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa]3.0e-2262.5Show/hide
Query:  SLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECID
        ++E  ET EEHDK NE  DQA L++V+ EFAKN+PSNDDLSIFLDFV  VN EHVLV+  A NG HV +ND A +NEH LG+N++ DDE  L+ ID
Subjt:  SLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECID

KAA0063162.1 hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa]3.5e-2657.14Show/hide
Query:  PKPTNTSSS---SSSSQESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGK
        P  T  SS+   S  + E+ ESLETLE+HD+ +E IDQA LEYV+NEFAKN+PS+DD+SIFLDF   VN EHVLV+  A N QHV +ND AY+NEH LG+
Subjt:  PKPTNTSSS---SSSSQESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGK

Query:  NLDIDDELILECIDIDDRQDIDFHSK
        N+  DDE IL+ I I++  D   H K
Subjt:  NLDIDDELILECIDIDDRQDIDFHSK

KAA0066481.1 Retrotransposon gag protein [Cucumis melo var. makuwa]7.2e-2461Show/hide
Query:  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD
        +++ESL+TL+EHD+ N+ I+QA LEY+DNEFAKN+PS+DDLSIFLDFV  VN EHVLV+  A N +HV +ND A +NEH LG+N++ DDE  L+ IDI++
Subjt:  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD

TrEMBL top hitse value%identityAlignment
A0A5A7TE46 Uncharacterized protein1.5e-2259Show/hide
Query:  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD
        ++LESL+T EEHDK NE IDQ  LEYV+NEFAKN+ S+DD SIFLDF   VN EH LV+  A NG H  +ND A +NEH LG+N++ D+E  L+ IDI++
Subjt:  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD

A0A5A7V4I7 Uncharacterized protein1.7e-2657.14Show/hide
Query:  PKPTNTSSS---SSSSQESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGK
        P  T  SS+   S  + E+ ESLETLE+HD+ +E IDQA LEYV+NEFAKN+PS+DD+SIFLDF   VN EHVLV+  A N QHV +ND AY+NEH LG+
Subjt:  PKPTNTSSS---SSSSQESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGK

Query:  NLDIDDELILECIDIDDRQDIDFHSK
        N+  DDE IL+ I I++  D   H K
Subjt:  NLDIDDELILECIDIDDRQDIDFHSK

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family2.5e-3854.05Show/hide
Query:  MGGFRRNDPQSISYNSRWRDHPNLREGPQEPKPTNTSSSSSSSQ--------------------------------ESLESLETLEEHDKINEFIDQAIL
        M GFRRND  S +YNS WRDHPNLR GPQEPKPTNTSSSSSSSQ                                ++LESL+ LEEHDK NE IDQA L
Subjt:  MGGFRRNDPQSISYNSRWRDHPNLREGPQEPKPTNTSSSSSSSQ--------------------------------ESLESLETLEEHDKINEFIDQAIL

Query:  EYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQDIDFHSK
        E+V+NEFAKN+PS+DDLSIFLDFV  VN E+VLV+  A N +HV  ND   +NEH  G+N+  D E IL+ I I++  D   H K
Subjt:  EYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQDIDFHSK

A0A5D3D5G7 Uncharacterized protein1.5e-2262.5Show/hide
Query:  SLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECID
        ++E  ET EEHDK NE  DQA L++V+ EFAKN+PSNDDLSIFLDFV  VN EHVLV+  A NG HV +ND A +NEH LG+N++ DDE  L+ ID
Subjt:  SLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECID

A0A5D3DU65 Retrotransposon gag protein3.5e-2461Show/hide
Query:  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD
        +++ESL+TL+EHD+ N+ I+QA LEY+DNEFAKN+PS+DDLSIFLDFV  VN EHVLV+  A N +HV +ND A +NEH LG+N++ DDE  L+ IDI++
Subjt:  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGTTTTAGAAGAAACGATCCACAAAGTATCTCCTACAACTCTAGATGGAGGGACCATCCAAATCTTAGGGAGGGTCCTCAAGAACCTAAACCTACCAACACTTC
TTCTTCCTCATCATCATCACAAGAATCATTAGAGTCATTAGAGACACTAGAAGAGCATGACAAAATTAATGAGTTTATTGATCAAGCAATTTTAGAGTACGTTGATAATG
AATTTGCCAAGAACGAACCTAGTAATGATGATCTTTCTATTTTTCTTGACTTTGTTGGATGTGTAAATCAAGAACATGTTTTAGTTAATGGATTCGCACTTAATGGACAA
CATGTATCTAATAATGATTCTGCATATACCAATGAGCATGGCTTAGGTAAAAACCTTGATATAGATGATGAGCTTATTTTAGAATGCATTGACATTGATGATAGGCAAGA
CATAGACTTCCACAGTAAAGTTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGTTTTAGAAGAAACGATCCACAAAGTATCTCCTACAACTCTAGATGGAGGGACCATCCAAATCTTAGGGAGGGTCCTCAAGAACCTAAACCTACCAACACTTC
TTCTTCCTCATCATCATCACAAGAATCATTAGAGTCATTAGAGACACTAGAAGAGCATGACAAAATTAATGAGTTTATTGATCAAGCAATTTTAGAGTACGTTGATAATG
AATTTGCCAAGAACGAACCTAGTAATGATGATCTTTCTATTTTTCTTGACTTTGTTGGATGTGTAAATCAAGAACATGTTTTAGTTAATGGATTCGCACTTAATGGACAA
CATGTATCTAATAATGATTCTGCATATACCAATGAGCATGGCTTAGGTAAAAACCTTGATATAGATGATGAGCTTATTTTAGAATGCATTGACATTGATGATAGGCAAGA
CATAGACTTCCACAGTAAAGTTCGTTGA
Protein sequenceShow/hide protein sequence
MGGFRRNDPQSISYNSRWRDHPNLREGPQEPKPTNTSSSSSSSQESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQ
HVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQDIDFHSKVR