; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0026293 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026293
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr03:20314800..20315843
RNA-Seq ExpressionPI0026293
SyntenyPI0026293
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051815.1 hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa]6.6e-2867.39Show/hide
Query:  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH
        NN+N P  Q  QE N AY+AHDLD+PI+SYA+PNLY FNPGIAY  F  N  FEIK +ML M QNAGQF GHP EDP++HIR+FY ICASF+
Subjt:  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH

KAA0062403.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa]2.0e-2970.65Show/hide
Query:  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH
        NN+  P  QAAQ  N  Y+A D DRPIRSYA+PNLY FNPGIAYP F+ N RFEIK VMLQ+IQNAGQF  HP +DPH++IR+FYSICASFH
Subjt:  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH

TYK02149.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa]2.3e-2565.96Show/hide
Query:  NNNRNAPLPQAAQ-EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH
        N N   PL  A Q + N   +AH+LD PIR+Y + NLY FN GIAY VF  NA FE+KPVMLQMIQ AGQF G+ GEDPHEHI+SFYSICASFH
Subjt:  NNNRNAPLPQAAQ-EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH

TYK08803.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.0e-2056.44Show/hide
Query:  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQM
        MS+GEQP+F +D +IER F+RNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP F  N RF+IKPVML +
Subjt:  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQM

Query:  I
        +
Subjt:  I

WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.9e-2748.28Show/hide
Query:  FMSDGEQPQFELDPKIERTFRRNRRRARQRQARRMENNNRNAPL--PQAAQ---------------EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPV
        +MS+G+ P F++DP+IERTFRR  R+ +QR++ +    N +A    PQA Q               + N   +AHD +RP+R YA+PNLY+F PGI  P 
Subjt:  FMSDGEQPQFELDPKIERTFRRNRRRARQRQARRMENNNRNAPL--PQAAQ---------------EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPV

Query:  FNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASF
        F  N RFE+KPVMLQM+Q AGQF G  GEDPH H++SF  IC++F
Subjt:  FNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASF

TrEMBL top hitse value%identityAlignment
A0A5A7UDN8 Uncharacterized protein3.2e-2867.39Show/hide
Query:  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH
        NN+N P  Q  QE N AY+AHDLD+PI+SYA+PNLY FNPGIAY  F  N  FEIK +ML M QNAGQF GHP EDP++HIR+FY ICASF+
Subjt:  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH

A0A5A7UXZ2 Retrovirus-related Pol polyprotein from transposon 17.61.4e-2056.44Show/hide
Query:  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQM
        MS+GEQP+F +D +IER F+RNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP F  N RF+IKPVML +
Subjt:  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQM

Query:  I
        +
Subjt:  I

A0A5A7V2U7 Putative disease resistance RPP13-like protein 19.9e-3070.65Show/hide
Query:  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH
        NN+  P  QAAQ  N  Y+A D DRPIRSYA+PNLY FNPGIAYP F+ N RFEIK VMLQ+IQNAGQF  HP +DPH++IR+FYSICASFH
Subjt:  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH

A0A5D3BVN1 Putative disease resistance RPP13-like protein 11.1e-2565.96Show/hide
Query:  NNNRNAPLPQAAQ-EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH
        N N   PL  A Q + N   +AH+LD PIR+Y + NLY FN GIAY VF  NA FE+KPVMLQMIQ AGQF G+ GEDPHEHI+SFYSICASFH
Subjt:  NNNRNAPLPQAAQ-EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH

A0A5D3CAB5 Retrovirus-related Pol polyprotein from transposon 17.61.4e-2056.44Show/hide
Query:  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQM
        MS+GEQP+F +D +IER F+RNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP F  N RF+IKPVML +
Subjt:  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQM

Query:  I
        +
Subjt:  I

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGGCTCCGAAAGAAGTTCAATTTCAGCTGAATCGTGCGTTCAAACCCGAAGAACCTGAGAACAAGTTTATGAGTGACGGTGAACAGCCGCAATTCGAACTTGA
CCCTAAAATTGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCAAGGCAAAGACAAGCAAGAAGAATGGAAAACAATAATAGAAATGCCCCTCTACCGCAAGCTGCCCAAG
AACCAAACACCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCAGCACCCAACCTATACAGCTTCAACCCAGGGATCGCTTACCCTGTGTTCAACAGA
AATGCTAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAACGCCGGACAATTTAGCGGTCACCCTGGAGAAGATCCACATGAGCACATTAGAAGTTTCTACTC
TATCTGTGCTTCCTTCCATTGCCAGACATCTCACCTGAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGGCTCCGAAAGAAGTTCAATTTCAGCTGAATCGTGCGTTCAAACCCGAAGAACCTGAGAACAAGTTTATGAGTGACGGTGAACAGCCGCAATTCGAACTTGA
CCCTAAAATTGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCAAGGCAAAGACAAGCAAGAAGAATGGAAAACAATAATAGAAATGCCCCTCTACCGCAAGCTGCCCAAG
AACCAAACACCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCAGCACCCAACCTATACAGCTTCAACCCAGGGATCGCTTACCCTGTGTTCAACAGA
AATGCTAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAACGCCGGACAATTTAGCGGTCACCCTGGAGAAGATCCACATGAGCACATTAGAAGTTTCTACTC
TATCTGTGCTTCCTTCCATTGCCAGACATCTCACCTGAAGAACTGA
Protein sequenceShow/hide protein sequence
MAKAPKEVQFQLNRAFKPEEPENKFMSDGEQPQFELDPKIERTFRRNRRRARQRQARRMENNNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNR
NARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFHCQTSHLKN