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PI0026309 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026309
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:13686805..13693343
RNA-Seq ExpressionPI0026309
SyntenyPI0026309
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]8.6e-6469.61Show/hide
Query:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNP LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
         EMKQQ++QLT AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP++ E+KV+S  + L  +N+ KEE  ET  SPS+SK
Subjt:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-6368.51Show/hide
Query:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNP LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
         EMKQQ++QLT  ISK++GKGKL AQPDHANVS ISLRS K L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+SK
Subjt:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-6470.17Show/hide
Query:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPH NTYN+GWRDNPKLRWGNDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
         EMKQQ++QLT AISK++GKGKLPAQP+HANVSAISLRSGK L+TP++ E+KV+S  + L  +N+ KEEN ET  SPS+ K
Subjt:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-6470.56Show/hide
Query:  TTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQN
        TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNP LRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQN

Query:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
        EMKQQ++QLT AISK++GKGKLPAQ DHANVSAISLRSGK L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+SK
Subjt:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]3.3e-6368.51Show/hide
Query:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNP LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
         EMKQQ++QLT  ISK++GKGKL AQPDHANVS ISLRS K L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+SK
Subjt:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.6e-6368.51Show/hide
Query:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNP LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
         EMKQQ++QLT  ISK++GKGKL AQPDHANVS ISLRS K L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+SK
Subjt:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

A0A5A7VE49 Retrotransposon gag protein1.4e-6470.17Show/hide
Query:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPH NTYN+GWRDNPKLRWGNDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
         EMKQQ++QLT AISK++GKGKLPAQP+HANVSAISLRSGK L+TP++ E+KV+S  + L  +N+ KEEN ET  SPS+ K
Subjt:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

A0A5A7VQ60 Retrotransposon gag protein6.4e-6570.56Show/hide
Query:  TTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQN
        TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNP LRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQN

Query:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
        EMKQQ++QLT AISK++GKGKLPAQ DHANVSAISLRSGK L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+SK
Subjt:  EMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

A0A5D3DCG3 Retrotransposon gag protein1.6e-6368.51Show/hide
Query:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNP LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
         EMKQQ++QLT  ISK++GKGKL AQPDHANVS ISLRS K L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+SK
Subjt:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

E5GBZ4 Retrotransposon gag protein4.2e-6469.61Show/hide
Query:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNP LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK
         EMKQQ++QLT AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP++ E+KV+S  + L  +N+ KEE  ET  SPS+SK
Subjt:  NEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACCTTATTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGTAAAATGTGGGGTGTGCGGTCTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAAACTTAGATGGGGAAACGACAACCAACAACCTGCACAAG
CAACTTCATCTTCAAATAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACAGTTTCTTTTCAAAATGAAATGAAACAGCAAATATCTCAATTA
ACAAATGCCATAAGTAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCAAACGTAAGTGCCATCTCGCTCAGGAGCGGTAAAACTCTGGAAACCCCTTC
AAGCGAAGAAAAGGTATCTTCTACCCCTGTCCTTCTAGAAGATGAAAATAAGAAAAAGGAAGAAAATCCAGAAACTTATGCTTCACCATCTTCATCAAAAGCCCCTCCAC
AAGCCCTTATATGCAAAAGTAAGCTAAAACAAGCTTCTTGCGGCCAAATCTGTGAAATACAAACTCAAGGGCAAAACAGTAATCTTCCCAAAGGAATTCAAAAATCCTCT
TCGCGACAAAACTATCCTAGATTGCGTAGCTCATCGCAAACTGCATACTTCGCGAGGCAATGCTTCATGACTCGAGCTTCGCGAGATACTTCATATGCAAAAGTACACAC
TTCCCTTACCGCATATATACTCATTCGCCAGCTCACTCACCCAGCTCAAGCTTACTCATTTCACAAGACGCATGCAACCTTCATCAGCTCGCAAGATGCATCGCAGCCTT
CAGCTTCAGCTTGCCGAAAAACAGTTACAACCGCCAAGCCCATTAGGCCCAAGACCCAAGCCCATTGTAACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACCTTATTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGTAAAATGTGGGGTGTGCGGTCTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAAACTTAGATGGGGAAACGACAACCAACAACCTGCACAAG
CAACTTCATCTTCAAATAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACAGTTTCTTTTCAAAATGAAATGAAACAGCAAATATCTCAATTA
ACAAATGCCATAAGTAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCAAACGTAAGTGCCATCTCGCTCAGGAGCGGTAAAACTCTGGAAACCCCTTC
AAGCGAAGAAAAGGTATCTTCTACCCCTGTCCTTCTAGAAGATGAAAATAAGAAAAAGGAAGAAAATCCAGAAACTTATGCTTCACCATCTTCATCAAAAGCCCCTCCAC
AAGCCCTTATATGCAAAAGTAAGCTAAAACAAGCTTCTTGCGGCCAAATCTGTGAAATACAAACTCAAGGGCAAAACAGTAATCTTCCCAAAGGAATTCAAAAATCCTCT
TCGCGACAAAACTATCCTAGATTGCGTAGCTCATCGCAAACTGCATACTTCGCGAGGCAATGCTTCATGACTCGAGCTTCGCGAGATACTTCATATGCAAAAGTACACAC
TTCCCTTACCGCATATATACTCATTCGCCAGCTCACTCACCCAGCTCAAGCTTACTCATTTCACAAGACGCATGCAACCTTCATCAGCTCGCAAGATGCATCGCAGCCTT
CAGCTTCAGCTTGCCGAAAAACAGTTACAACCGCCAAGCCCATTAGGCCCAAGACCCAAGCCCATTGTAACAAATAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQL
TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKVSSTPVLLEDENKKKEENPETYASPSSSKAPPQALICKSKLKQASCGQICEIQTQGQNSNLPKGIQKSS
SRQNYPRLRSSSQTAYFARQCFMTRASRDTSYAKVHTSLTAYILIRQLTHPAQAYSFHKTHATFISSQDASQPSASACRKTVTTAKPIRPKTQAHCNK