; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0026371 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026371
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr09:9226363..9242475
RNA-Seq ExpressionPI0026371
SyntenyPI0026371
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]2.6e-5967.58Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR
        M+MEVL+R+LN+    F++HHRCEKV LTHLTFADDL+IFC  D  SI F+R+ L++FG+LSGL AN  KSS+FVAG+           MGF  G LP+R
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE
        YL +PLL+GRLRS+DCAPLIQRITS+I SW+ARVLSFAGRLQLVRSVLRS QV+WASVFVL A VH+ VD++L SYLWRGKE
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE

KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.0e-5848.11Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLRLLL-----MGFVLGTLPIR
        M+M+V +R+LN+P   F++H  CEKV LT LTFADDL+IFC  D  S+ FVRETL++FG+L GL ANL K S+FVAG T  +       MGF+LG LP+R
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLRLLL-----MGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKEVLS---------------
        YL +PLL+GRLR SDCAPLIQRITSRI SW+ARVLSFAGR QLVRSV RS QV+WASVFVL + VH+ VD++L SYLWR ++  S               
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKEVLS---------------

Query:  ------------------------------CV---------------------------ADPWLHSGAIIRQMGERVVYDAASSKEARLSE
                                      C+                            DPWL    I+ Q+GERV+YDAAS +EARLSE
Subjt:  ------------------------------CV---------------------------ADPWLHSGAIIRQMGERVVYDAASSKEARLSE

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]4.5e-5968.68Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR
        M+MEVL+R+LN+    F++HHRCEKV LT+LTFADDL+IFC  D  SI F+RE L++FG+LSGL AN  KSS+FVAG+           MGFV G LPIR
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE
        YL +PLL+GRLRS+D APLIQRITSRI SW+ARVLSFAGRLQLVR VLRS QV+WASVFVL A VHH VD++L+SYLWRGKE
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.7e-6154.79Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGL-----TLRLLLMGFVLGTLPIR
        M+MEVL+R+LN+    F++HHRCEKV LTHLTFADDL+IFC  D  SI F+RE L++FG+LSGL AN  KS +FVAG+     +     MGFV G LP+R
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGL-----TLRLLLMGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWR---------------------
        YL +PLL+GRLRS+DCAP+IQRITSRI SW ARVLSFAGRLQLV SVLRS QV+WASVFVL A VH+ VD++L SYLWR                     
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWR---------------------

Query:  --------------GK---EVLSCVADPW----LHSGAIIRQMGERVVYDAASSKEARLSE
                      G+   +V S V   W    +  GAI+ Q+GERV+YDAAS +EARLS+
Subjt:  --------------GK---EVLSCVADPW----LHSGAIIRQMGERVVYDAASSKEARLSE

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]2.6e-5967.58Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR
        M+MEVL+R+LN+    F++HHRCEKV LTHLTFADDL+IFC  D  SI F+R+ L++FG+LSGL AN  KSS+FVAG+           MGF  G LP+R
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE
        YL +PLL+GRLRS+DCAPLIQRITS+I SW+ARVLSFAGRLQLVRSVLRS QV+WASVFVL A VH+ VD++L SYLWRGKE
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE

TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein1.3e-5967.58Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR
        M+MEVL+R+LN+    F++HHRCEKV LTHLTFADDL+IFC  D  SI F+R+ L++FG+LSGL AN  KSS+FVAG+           MGF  G LP+R
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE
        YL +PLL+GRLRS+DCAPLIQRITS+I SW+ARVLSFAGRLQLVRSVLRS QV+WASVFVL A VH+ VD++L SYLWRGKE
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein4.9e-5948.11Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLRLLL-----MGFVLGTLPIR
        M+M+V +R+LN+P   F++H  CEKV LT LTFADDL+IFC  D  S+ FVRETL++FG+L GL ANL K S+FVAG T  +       MGF+LG LP+R
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLRLLL-----MGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKEVLS---------------
        YL +PLL+GRLR SDCAPLIQRITSRI SW+ARVLSFAGR QLVRSV RS QV+WASVFVL + VH+ VD++L SYLWR ++  S               
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKEVLS---------------

Query:  ------------------------------CV---------------------------ADPWLHSGAIIRQMGERVVYDAASSKEARLSE
                                      C+                            DPWL    I+ Q+GERV+YDAAS +EARLSE
Subjt:  ------------------------------CV---------------------------ADPWLHSGAIIRQMGERVVYDAASSKEARLSE

A0A5A7UV01 F17F8.52.2e-5968.68Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR
        M+MEVL+R+LN+    F++HHRCEKV LT+LTFADDL+IFC  D  SI F+RE L++FG+LSGL AN  KSS+FVAG+           MGFV G LPIR
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE
        YL +PLL+GRLRS+D APLIQRITSRI SW+ARVLSFAGRLQLVR VLRS QV+WASVFVL A VHH VD++L+SYLWRGKE
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein1.8e-6154.79Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGL-----TLRLLLMGFVLGTLPIR
        M+MEVL+R+LN+    F++HHRCEKV LTHLTFADDL+IFC  D  SI F+RE L++FG+LSGL AN  KS +FVAG+     +     MGFV G LP+R
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGL-----TLRLLLMGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWR---------------------
        YL +PLL+GRLRS+DCAP+IQRITSRI SW ARVLSFAGRLQLV SVLRS QV+WASVFVL A VH+ VD++L SYLWR                     
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWR---------------------

Query:  --------------GK---EVLSCVADPW----LHSGAIIRQMGERVVYDAASSKEARLSE
                      G+   +V S V   W    +  GAI+ Q+GERV+YDAAS +EARLS+
Subjt:  --------------GK---EVLSCVADPW----LHSGAIIRQMGERVVYDAASSKEARLSE

A0A5D3DXE4 Reverse transcriptase domain-containing protein1.3e-5967.58Show/hide
Query:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR
        M+MEVL+R+LN+    F++HHRCEKV LTHLTFADDL+IFC  D  SI F+R+ L++FG+LSGL AN  KSS+FVAG+           MGF  G LP+R
Subjt:  MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLR-----LLLMGFVLGTLPIR

Query:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE
        YL +PLL+GRLRS+DCAPLIQRITS+I SW+ARVLSFAGRLQLVRSVLRS QV+WASVFVL A VH+ VD++L SYLWRGKE
Subjt:  YLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKE

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.5e-0633.33Show/hide
Query:  VPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLW
        +P+L  R+       +++R++SR+  W  + LSFAGRL L ++VL S  V   S  +L   + + +D+L  ++LW
Subjt:  VPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLW

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.4e-1846.74Show/hide
Query:  FVLGTLPIRYLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKEV
        F  G LP+RYL +PLL+ ++ +SD  PL+++I  RI  W+AR LSFAGRLQL+ SV+ S   FW S F L +     +D +  S+LW G E+
Subjt:  FVLGTLPIRYLRVPLLSGRLRSSDCAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATGGAGGTGCTAACTCGTCTTTTGAATAGACCTTCTATGGATTTCAAGTATCATCATCGTTGTGAGAAGGTTTGCTTGACGCATCTGACCTTCGCTGATGATCT
TATTATTTTTTGTTATCCTGACACCGCTTCCATTGGCTTTGTGCGTGAGACTCTTCGTCAGTTTGGGAAGTTATCGGGATTAATTGCTAATCTGGATAAGAGCTCTATGT
TTGTGGCGGGGTTGACATTGAGGCTGCTACTTATGGGGTTTGTGCTGGGTACTTTGCCTATTCGTTACCTGCGTGTTCCCTTACTCTCTGGTCGTCTGCGTTCTTCGGAT
TGTGCTCCGCTCATCCAGCGTATTACTAGTCGGATTTGGTCTTGGTCGGCTAGAGTATTATCCTTTGCTGGTAGACTTCAACTTGTGCGTTCGGTGTTGCGGAGTTTTCA
GGTCTTTTGGGCCAGTGTGTTTGTTTTGGCGGCAGAGGTGCATCATGCGGTCGATAGACTTTTGATGTCGTATCTATGGAGGGGTAAGGAGGTGTTGTCGTGTGTGGCTG
ACCCTTGGCTGCACAGTGGCGCGATCATTCGACAGATGGGTGAGCGGGTGGTGTATGATGCTGCGAGTAGTAAAGAGGCTAGGCTTTCTGAGTCATTGGCATGGATGGCG
AGTGGAGGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGATGGAGGTGCTAACTCGTCTTTTGAATAGACCTTCTATGGATTTCAAGTATCATCATCGTTGTGAGAAGGTTTGCTTGACGCATCTGACCTTCGCTGATGATCT
TATTATTTTTTGTTATCCTGACACCGCTTCCATTGGCTTTGTGCGTGAGACTCTTCGTCAGTTTGGGAAGTTATCGGGATTAATTGCTAATCTGGATAAGAGCTCTATGT
TTGTGGCGGGGTTGACATTGAGGCTGCTACTTATGGGGTTTGTGCTGGGTACTTTGCCTATTCGTTACCTGCGTGTTCCCTTACTCTCTGGTCGTCTGCGTTCTTCGGAT
TGTGCTCCGCTCATCCAGCGTATTACTAGTCGGATTTGGTCTTGGTCGGCTAGAGTATTATCCTTTGCTGGTAGACTTCAACTTGTGCGTTCGGTGTTGCGGAGTTTTCA
GGTCTTTTGGGCCAGTGTGTTTGTTTTGGCGGCAGAGGTGCATCATGCGGTCGATAGACTTTTGATGTCGTATCTATGGAGGGGTAAGGAGGTGTTGTCGTGTGTGGCTG
ACCCTTGGCTGCACAGTGGCGCGATCATTCGACAGATGGGTGAGCGGGTGGTGTATGATGCTGCGAGTAGTAAAGAGGCTAGGCTTTCTGAGTCATTGGCATGGATGGCG
AGTGGAGGTGGCTGA
Protein sequenceShow/hide protein sequence
MMMEVLTRLLNRPSMDFKYHHRCEKVCLTHLTFADDLIIFCYPDTASIGFVRETLRQFGKLSGLIANLDKSSMFVAGLTLRLLLMGFVLGTLPIRYLRVPLLSGRLRSSD
CAPLIQRITSRIWSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLAAEVHHAVDRLLMSYLWRGKEVLSCVADPWLHSGAIIRQMGERVVYDAASSKEARLSESLAWMA
SGGG