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PI0026428 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026428
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr04:21951174..21951981
RNA-Seq ExpressionPI0026428
SyntenyPI0026428
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040852.1 hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa]3.6e-1446.77Show/hide
Query:  GDHRGEASGSHARYQNNRPPHFR--HQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRK
        G++RGEA     R+ +   PH+     QQ TT TPS+ SS+  LLR+Y+Q+ +  +QSQT+SI NLE+ LGQLA +FS RP GSLPSNIE+PN   G  K
Subjt:  GDHRGEASGSHARYQNNRPPHFR--HQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRK

Query:  EKCHAMTLQSRRNLTIHDPESERS
         K     ++  R    HD  S +S
Subjt:  EKCHAMTLQSRRNLTIHDPESERS

KAA0041246.1 uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa]2.0e-2061Show/hide
Query:  NLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESERSNPISHSTAEIYNSSNNSN
        N ++   Q N+ LLQSQ SSI+NLE+QLGQL +N SRRP+GSLPSN E PNQ  GS KEKC  +TL+SRRNLTI +P+ ER N  S ST +I ++SN+SN
Subjt:  NLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESERSNPISHSTAEIYNSSNNSN

KGN51008.1 hypothetical protein Csa_008461 [Cucumis sativus]4.3e-1556.98Show/hide
Query:  SSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESER
        +  +E L REY+Q+N+ LLQSQ SSI+NLE+QLGQLAN+ S RP+G+L  N + P Q  GS  +K   +TL+SRRNLTIH+ ESE+
Subjt:  SSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESER

TYK27798.1 hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa]1.6e-1756.86Show/hide
Query:  GGQGDHRGEASGSHARYQNNRPPHFR-HQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGS
        GGQG + G+ASG   R   +RP H    QQQ TT TPS SSS+E L+R Y+++N+ LLQSQ +SIRNLE+Q+GQ+A +FS RPQ  LPSN EM NQA   
Subjt:  GGQGDHRGEASGSHARYQNNRPPHFR-HQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGS

Query:  RK
        +K
Subjt:  RK

XP_030498047.1 uncharacterized protein LOC115713707 [Cannabis sativa]1.0e-1346.51Show/hide
Query:  PWW--HCKGRHGGQGDHRGEASGSHARYQNNRPPHFRHQ---QQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSL
        P W  H     GGQG     +SG+  + + + PP F  Q   QQ      S +SSLE+L+R+Y+ KN+ ++QSQ +S+RNLEVQLGQLANN   RPQG+L
Subjt:  PWW--HCKGRHGGQGDHRGEASGSHARYQNNRPPHFRHQ---QQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSL

Query:  PSNIEMPNQARGSRKEKCHAMTLQSRRNL
        PS+ E P   R   KE C A+TL+S + L
Subjt:  PSNIEMPNQARGSRKEKCHAMTLQSRRNL

TrEMBL top hitse value%identityAlignment
A0A0A0KMN3 Uncharacterized protein8.7e-1444.64Show/hide
Query:  GGQGDHRGEASGSHARYQNNRPPHFRH---QQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQAR
        GG G+  G     +  +      H  H    Q H+++  S+  S+E+L +EY+Q+N+ LLQSQ +SI+NLE+Q+GQ+AN+ SR+P+G+LPSN E+P Q  
Subjt:  GGQGDHRGEASGSHARYQNNRPPHFRH---QQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQAR

Query:  GSRKEKCHAMTL
         S KEKC A+TL
Subjt:  GSRKEKCHAMTL

A0A0A0KN83 Uncharacterized protein2.1e-1556.98Show/hide
Query:  SSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESER
        +  +E L REY+Q+N+ LLQSQ SSI+NLE+QLGQLAN+ S RP+G+L  N + P Q  GS  +K   +TL+SRRNLTIH+ ESE+
Subjt:  SSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESER

A0A5A7TGS2 Uncharacterized protein9.5e-2161Show/hide
Query:  NLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESERSNPISHSTAEIYNSSNNSN
        N ++   Q N+ LLQSQ SSI+NLE+QLGQL +N SRRP+GSLPSN E PNQ  GS KEKC  +TL+SRRNLTI +P+ ER N  S ST +I ++SN+SN
Subjt:  NLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESERSNPISHSTAEIYNSSNNSN

A0A5D3D2S0 Uncharacterized protein1.7e-1446.77Show/hide
Query:  GDHRGEASGSHARYQNNRPPHFR--HQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRK
        G++RGEA     R+ +   PH+     QQ TT TPS+ SS+  LLR+Y+Q+ +  +QSQT+SI NLE+ LGQLA +FS RP GSLPSNIE+PN   G  K
Subjt:  GDHRGEASGSHARYQNNRPPHFR--HQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGSRK

Query:  EKCHAMTLQSRRNLTIHDPESERS
         K     ++  R    HD  S +S
Subjt:  EKCHAMTLQSRRNLTIHDPESERS

A0A5D3DWD5 Uncharacterized protein7.6e-1856.86Show/hide
Query:  GGQGDHRGEASGSHARYQNNRPPHFR-HQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGS
        GGQG + G+ASG   R   +RP H    QQQ TT TPS SSS+E L+R Y+++N+ LLQSQ +SIRNLE+Q+GQ+A +FS RPQ  LPSN EM NQA   
Subjt:  GGQGDHRGEASGSHARYQNNRPPHFR-HQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLANNFSRRPQGSLPSNIEMPNQARGS

Query:  RK
        +K
Subjt:  RK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATGGGATGAAAATGATTTCGGCAATCGCCGAGGAAGATGAGGAAGAAGCGATGAAGGAATGGATAAGAACGCCGTGGTGGCATTGCAAGGGGCGACATGGTGG
TCAAGGTGACCATCGCGGGGAAGCATCTGGCTCTCATGCGAGGTACCAAAACAACAGACCACCGCATTTCCGTCATCAACAACAACACACTACCACTACTCCATCCACGT
CTTCGTCTTTGGAAAACCTCCTTCGCGAGTATATACAGAAGAATAATGTCCTTCTGCAAAGCCAAACTTCATCAATTCGCAATCTGGAAGTGCAATTGGGGCAGTTGGCC
AACAATTTCTCTAGAAGACCACAAGGATCTCTCCCTAGCAATATAGAAATGCCAAATCAGGCGAGAGGATCTAGAAAAGAGAAGTGTCACGCGATGACACTACAAAGTAG
AAGAAATTTGACCATCCACGATCCTGAATCTGAACGTAGCAATCCCATTTCTCACTCTACTGCCGAGATCTACAACTCAAGTAACAATTCTAATCTGTCAATTTCTCTTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAATGGGATGAAAATGATTTCGGCAATCGCCGAGGAAGATGAGGAAGAAGCGATGAAGGAATGGATAAGAACGCCGTGGTGGCATTGCAAGGGGCGACATGGTGG
TCAAGGTGACCATCGCGGGGAAGCATCTGGCTCTCATGCGAGGTACCAAAACAACAGACCACCGCATTTCCGTCATCAACAACAACACACTACCACTACTCCATCCACGT
CTTCGTCTTTGGAAAACCTCCTTCGCGAGTATATACAGAAGAATAATGTCCTTCTGCAAAGCCAAACTTCATCAATTCGCAATCTGGAAGTGCAATTGGGGCAGTTGGCC
AACAATTTCTCTAGAAGACCACAAGGATCTCTCCCTAGCAATATAGAAATGCCAAATCAGGCGAGAGGATCTAGAAAAGAGAAGTGTCACGCGATGACACTACAAAGTAG
AAGAAATTTGACCATCCACGATCCTGAATCTGAACGTAGCAATCCCATTTCTCACTCTACTGCCGAGATCTACAACTCAAGTAACAATTCTAATCTGTCAATTTCTCTTT
AA
Protein sequenceShow/hide protein sequence
MKNGMKMISAIAEEDEEEAMKEWIRTPWWHCKGRHGGQGDHRGEASGSHARYQNNRPPHFRHQQQHTTTTPSTSSSLENLLREYIQKNNVLLQSQTSSIRNLEVQLGQLA
NNFSRRPQGSLPSNIEMPNQARGSRKEKCHAMTLQSRRNLTIHDPESERSNPISHSTAEIYNSSNNSNLSISL