CuGenDBv2

Gene ID	PI0026432
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr07:8720596..8722828
RNA-Seq Expression	PI0026432
Synteny	PI0026432
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

5.4e-72

70.48

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAKDNRKKALH
        GG+  K    AAK   KAK  +    H
Subjt:  GGK-RKGPTVAAKGKGKAKDNRKKALH

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

5.4e-72

70.48

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAKDNRKKALH
        GG+  K    AAK   KAK  +    H
Subjt:  GGK-RKGPTVAAKGKGKAKDNRKKALH

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

5.4e-72

70.48

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAKDNRKKALH
        GG+  K    AAK   KAK  +    H
Subjt:  GGK-RKGPTVAAKGKGKAKDNRKKALH

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

5.4e-72

70.48

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAKDNRKKALH
        GG+  K    AAK   KAK  +    H
Subjt:  GGK-RKGPTVAAKGKGKAKDNRKKALH

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

4.1e-72

72.6

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA+QTVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL++MV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAK
        GG+  K    AAK   KAK
Subjt:  GGK-RKGPTVAAKGKGKAK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

2.6e-72

70.48

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAKDNRKKALH
        GG+  K    AAK   KAK  +    H
Subjt:  GGK-RKGPTVAAKGKGKAKDNRKKALH

A0A5A7TU93 Gag/pol protein

2.6e-72

70.48

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAKDNRKKALH
        GG+  K    AAK   KAK  +    H
Subjt:  GGK-RKGPTVAAKGKGKAKDNRKKALH

A0A5A7TWB9 Gag/pol protein

2.6e-72

70.48

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAKDNRKKALH
        GG+  K    AAK   KAK  +    H
Subjt:  GGK-RKGPTVAAKGKGKAKDNRKKALH

A0A5A7U869 Gag/pol protein

2.6e-72

70.48

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAKDNRKKALH
        GG+  K    AAK   KAK  +    H
Subjt:  GGK-RKGPTVAAKGKGKAKDNRKKALH

A0A5A7V6N0 Gag/pol protein

2.0e-72

72.6

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF
        +EECP  P  NA+QTVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG  V+EHVL++MV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQF

Query:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK
        NVAE NGAVIDE SQV FILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKK
Subjt:  NVAETNGAVIDEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQQGSSSGTKSAPSSSRTKKIQKKK

Query:  GGK-RKGPTVAAKGKGKAK
        GG+  K    AAK   KAK
Subjt:  GGK-RKGPTVAAKGKGKAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAG
TATGTCCGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCTATTCAAATCCGGCACGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATTTGTTAAAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATT
GACGAGCAAAGTCAGGTATTCTTTATTTTAGAATCTCTTCCAAAGAGCTTCCTTCAATTCCGTAGTAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCT
TAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAAAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGCAGGGTTCATCATCTGGAACCA
AGTCTGCACCTTCATCTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGAGGAAAGGTCCTACTGTTGCTGCTAAGGGCAAGGGGAAAGCTAAGGATAATCGC
AAAAAGGCTTTACACAGTCGAATAGTAGAACGCGAAATGAGATTTCTTTACCTTTCGAAGTATGCGAGGAAACTTACTCTTCTTACCAGAGAAATAACTCTTTCGAAATT
CGGTGGATAA

mRNA sequence

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Protein sequence

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MEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQFVKEHVLDMMVQFNVAETNGAVI
DEQSQVFFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQQGSSSGTKSAPSSSRTKKIQKKKGGKRKGPTVAAKGKGKAKDNR
KKALHSRIVEREMRFLYLSKYARKLTLLTREITLSKFGG

PI0026432 (gene) of Melon (PI 482460) v1 genome