; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0026440 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026440
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:17112561..17114656
RNA-Seq ExpressionPI0026440
SyntenyPI0026440
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025957.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-5338.5Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS-------------------------------GVLNDTYIKVNVSAA
        MDRR FAIL HLL+  SGL S ++VD +E+VAMFLH+L H++KNRVIQR+FVRS                               G L+ TYIKVNV AA
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS-------------------------------GVLNDTYIKVNVSAA

Query:  DRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG-------------------------------------EYIPI
        DR  + T+K ++ATNVLGVCDTKGDFV+VL GWE S  +S+ILRD +++ NGL+V KG                                     ++  +
Subjt:  DRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG-------------------------------------EYIPI

Query:  ILLNHI-------------------------------------------------------GVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPG
          + H+                                                       G+L+KPF +YD+L Y F +DRATG   ETF D   N P 
Subjt:  ILLNHI-------------------------------------------------------GVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPG

Query:  GFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVE
        G+E F    GN+ E P +Y+Q +DMS  D+  SRP R+ EGRTGSSGSKRKR  Q    VE
Subjt:  GFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVE

KAA0031771.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4945.1Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRSG---------------------------VLNDTYIKVNVSAADRSR
        MDRR F I+ HLL+  +GL STE+VD++E+VAMFLHVL H++KNRVIQR+FVR G                           V N TYIKVNV A D+  
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRSG---------------------------VLNDTYIKVNVSAADRSR

Query:  YGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYI--------------PIILLNHIGVLNKPFS--HYDDLCYAFRK
        + T+K E+ATNVLGVCDTKGDFV+VLAGWE S  DSRIL D +SR NGL+V KG Y                  L    G  N+P +   Y ++ ++  +
Subjt:  YGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYI--------------PIILLNHIGVLNKPFS--HYDDLCYAFRK

Query:  ---DRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII
           +RA G   + +   R      +  F    GN+ + P +YSQG+D+S  D+  SRP R +EGR GSSGSKRKRG Q    VE I
Subjt:  ---DRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.1e-5437.11Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G
        MDRRCFAIL HLL+ T+ L  TEV+D++E+VAMFLH+L H+MKNR+IQR+FVRS                                             G
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G

Query:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG----------------------------
         L+DTYIKVNVSA DR RY T+K EVA NVLGVCDTKGDFVFVL+GWE S  DSRILRD ISR NGL+V KG                            
Subjt:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG----------------------------

Query:  -------------------------------------------EYIPIIL------------------------------------------LNHI----
                                                    Y P+ +                                          +N+I    
Subjt:  -------------------------------------------EYIPIIL------------------------------------------LNHI----

Query:  ------------GVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPGGFEG-FPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGS
                     +L+K F +YDDL Y F KDRAT A  ETF D  SNVP  F G  P D  +D +IPMMYSQG+ MSP ++ G R G+  E +  SSGS
Subjt:  ------------GVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPGGFEG-FPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGS

Query:  KRKRGGQVVQTVEII
        KRK+G +  +TVE+I
Subjt:  KRKRGGQVVQTVEII

KAA0067183.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.5e-4945.91Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G
        MDRRC     HLL+ T+GL  T+V+D++E+VAMF+H+L H+MKNR+IQRKFVR                                              G
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G

Query:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPIILLNHIGVLNKPFSHYDDLCYAF
         L+ TYIKVNVSA DR RY T+K +V TNVLGVCD KGDFVFVL+ WE S  DSRIL+D ISR NGL+               G+LNK F +YDDL Y F
Subjt:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPIILLNHIGVLNKPFSHYDDLCYAF

Query:  RKDRATGAHVETFTDFRSNVPGGF-EGFPADYGNDTEIPMMYSQGLDMSPTDIAGSR
         KDR T    +TF +  SNVP  F +        D +IPMMYSQG+ MSP ++ G R
Subjt:  RKDRATGAHVETFTDFRSNVPGGF-EGFPADYGNDTEIPMMYSQGLDMSPTDIAGSR

TYK02751.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.6e-5236.95Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G
        MDRRCF IL HLL+  +GL S EVVD++E+VAMFLH++ H++KNRVIQR+F+RS                                             G
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G

Query:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPI-----------------------
         L+ TYIKVNV A+DR+RY T K EVATNVLG+CDTKGDFV+VLAGWE S  DSRIL D ISRPNGL+V KG Y  +                       
Subjt:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPI-----------------------

Query:  -------------------------------------------------------------------ILLNHI------------GVLNKPFSHYDDLCY
                                                                           IL   +            G+LNK F HYD+L Y
Subjt:  -------------------------------------------------------------------ILLNHI------------GVLNKPFSHYDDLCY

Query:  AFRKDRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII
         F KDRAT    E+F +  SN   G++ F AD   D + P MYSQGL+MS  D+ G+R  R+ E R  SSGSK+KR G    + +I+
Subjt:  AFRKDRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII

TrEMBL top hitse value%identityAlignment
A0A5A7SML2 Retrotransposon protein8.6e-5438.5Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS-------------------------------GVLNDTYIKVNVSAA
        MDRR FAIL HLL+  SGL S ++VD +E+VAMFLH+L H++KNRVIQR+FVRS                               G L+ TYIKVNV AA
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS-------------------------------GVLNDTYIKVNVSAA

Query:  DRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG-------------------------------------EYIPI
        DR  + T+K ++ATNVLGVCDTKGDFV+VL GWE S  +S+ILRD +++ NGL+V KG                                     ++  +
Subjt:  DRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG-------------------------------------EYIPI

Query:  ILLNHI-------------------------------------------------------GVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPG
          + H+                                                       G+L+KPF +YD+L Y F +DRATG   ETF D   N P 
Subjt:  ILLNHI-------------------------------------------------------GVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPG

Query:  GFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVE
        G+E F    GN+ E P +Y+Q +DMS  D+  SRP R+ EGRTGSSGSKRKR  Q    VE
Subjt:  GFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVE

A0A5A7SQE9 Retrotransposon protein9.8e-5045.1Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRSG---------------------------VLNDTYIKVNVSAADRSR
        MDRR F I+ HLL+  +GL STE+VD++E+VAMFLHVL H++KNRVIQR+FVR G                           V N TYIKVNV A D+  
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRSG---------------------------VLNDTYIKVNVSAADRSR

Query:  YGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYI--------------PIILLNHIGVLNKPFS--HYDDLCYAFRK
        + T+K E+ATNVLGVCDTKGDFV+VLAGWE S  DSRIL D +SR NGL+V KG Y                  L    G  N+P +   Y ++ ++  +
Subjt:  YGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYI--------------PIILLNHIGVLNKPFS--HYDDLCYAFRK

Query:  ---DRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII
           +RA G   + +   R      +  F    GN+ + P +YSQG+D+S  D+  SRP R +EGR GSSGSKRKRG Q    VE I
Subjt:  ---DRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII

A0A5A7SQU2 Putative nuclease HARBI11.0e-5437.11Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G
        MDRRCFAIL HLL+ T+ L  TEV+D++E+VAMFLH+L H+MKNR+IQR+FVRS                                             G
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G

Query:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG----------------------------
         L+DTYIKVNVSA DR RY T+K EVA NVLGVCDTKGDFVFVL+GWE S  DSRILRD ISR NGL+V KG                            
Subjt:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG----------------------------

Query:  -------------------------------------------EYIPIIL------------------------------------------LNHI----
                                                    Y P+ +                                          +N+I    
Subjt:  -------------------------------------------EYIPIIL------------------------------------------LNHI----

Query:  ------------GVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPGGFEG-FPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGS
                     +L+K F +YDDL Y F KDRAT A  ETF D  SNVP  F G  P D  +D +IPMMYSQG+ MSP ++ G R G+  E +  SSGS
Subjt:  ------------GVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPGGFEG-FPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGS

Query:  KRKRGGQVVQTVEII
        KRK+G +  +TVE+I
Subjt:  KRKRGGQVVQTVEII

A0A5A7VGH2 Putative nuclease HARBI12.2e-4945.91Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G
        MDRRC     HLL+ T+GL  T+V+D++E+VAMF+H+L H+MKNR+IQRKFVR                                              G
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G

Query:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPIILLNHIGVLNKPFSHYDDLCYAF
         L+ TYIKVNVSA DR RY T+K +V TNVLGVCD KGDFVFVL+ WE S  DSRIL+D ISR NGL+               G+LNK F +YDDL Y F
Subjt:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPIILLNHIGVLNKPFSHYDDLCYAF

Query:  RKDRATGAHVETFTDFRSNVPGGF-EGFPADYGNDTEIPMMYSQGLDMSPTDIAGSR
         KDR T    +TF +  SNVP  F +        D +IPMMYSQG+ MSP ++ G R
Subjt:  RKDRATGAHVETFTDFRSNVPGGF-EGFPADYGNDTEIPMMYSQGLDMSPTDIAGSR

A0A5D3BSN2 Putative nuclease HARBI11.2e-5236.95Show/hide
Query:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G
        MDRRCF IL HLL+  +GL S EVVD++E+VAMFLH++ H++KNRVIQR+F+RS                                             G
Subjt:  MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS---------------------------------------------G

Query:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPI-----------------------
         L+ TYIKVNV A+DR+RY T K EVATNVLG+CDTKGDFV+VLAGWE S  DSRIL D ISRPNGL+V KG Y  +                       
Subjt:  VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPI-----------------------

Query:  -------------------------------------------------------------------ILLNHI------------GVLNKPFSHYDDLCY
                                                                           IL   +            G+LNK F HYD+L Y
Subjt:  -------------------------------------------------------------------ILLNHI------------GVLNKPFSHYDDLCY

Query:  AFRKDRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII
         F KDRAT    E+F +  SN   G++ F AD   D + P MYSQGL+MS  D+ G+R  R+ E R  SSGSK+KR G    + +I+
Subjt:  AFRKDRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28950.1 unknown protein3.5e-0734.38Show/hide
Query:  GVLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISR
        G ++DT+I   VS      +  +K +++ N+L  C+   +F++VL+GWE S  DS++L D ++R
Subjt:  GVLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGAAGATGTTTTGCCATTCTATACCACCTACTTAAGATGACTTCTGGATTAGGGTCAACAGAAGTCGTCGACATCAAGGAGATAGTCGCCATGTTCCTACATGT
ACTCATGCACAACATGAAGAACCGAGTGATCCAAAGGAAGTTCGTGCGGTCGGGTGTGTTAAATGACACATACATAAAGGTAAACGTGAGTGCAGCTGATCGTTCGAGAT
ATGGGACACAGAAGGATGAAGTTGCCACAAACGTCCTAGGTGTATGTGATACGAAAGGTGATTTTGTGTTTGTCTTAGCTGGTTGGGAAAGGTCCAAAGTGGATTCTCGC
ATCCTTAGAGATGTTATTTCAAGACCTAACGGACTAAGGGTTTCGAAGGGTGAGTACATACCCATCATTCTTCTCAACCATATTGGCGTCCTAAACAAGCCATTTTCCCA
TTACGACGACCTATGCTATGCATTTCGAAAGGATCGTGCGACCGGAGCTCATGTAGAGACATTCACCGATTTCAGGTCGAATGTGCCTGGAGGGTTCGAGGGATTTCCCG
CTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTAGACATGTCACCTACTGACATTGCAGGCTCACGACCCGGTCGCTTGATGGAGGGTAGGACT
GGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCCAGGTAGTACAGACTGTGGAAATCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGAAGATGTTTTGCCATTCTATACCACCTACTTAAGATGACTTCTGGATTAGGGTCAACAGAAGTCGTCGACATCAAGGAGATAGTCGCCATGTTCCTACATGT
ACTCATGCACAACATGAAGAACCGAGTGATCCAAAGGAAGTTCGTGCGGTCGGGTGTGTTAAATGACACATACATAAAGGTAAACGTGAGTGCAGCTGATCGTTCGAGAT
ATGGGACACAGAAGGATGAAGTTGCCACAAACGTCCTAGGTGTATGTGATACGAAAGGTGATTTTGTGTTTGTCTTAGCTGGTTGGGAAAGGTCCAAAGTGGATTCTCGC
ATCCTTAGAGATGTTATTTCAAGACCTAACGGACTAAGGGTTTCGAAGGGTGAGTACATACCCATCATTCTTCTCAACCATATTGGCGTCCTAAACAAGCCATTTTCCCA
TTACGACGACCTATGCTATGCATTTCGAAAGGATCGTGCGACCGGAGCTCATGTAGAGACATTCACCGATTTCAGGTCGAATGTGCCTGGAGGGTTCGAGGGATTTCCCG
CTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTAGACATGTCACCTACTGACATTGCAGGCTCACGACCCGGTCGCTTGATGGAGGGTAGGACT
GGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCCAGGTAGTACAGACTGTGGAAATCATTTAG
Protein sequenceShow/hide protein sequence
MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRSGVLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSR
ILRDVISRPNGLRVSKGEYIPIILLNHIGVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRT
GSSGSKRKRGGQVVQTVEII