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PI0026445 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026445
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:22391483..22391932
RNA-Seq ExpressionPI0026445
SyntenyPI0026445
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044843.1 retrotransposon protein [Cucumis melo var. makuwa]8.2e-3354.81Show/hide
Query:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA
        D + P MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G  +++ +I+R+A+EY N+QL  IAEW   Q QDA+ T  E+VRQL+ I EL+ +DR 
Subjt:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA

Query:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD
        R MRI+MR+VDDMK F+++PD +K  YC++ILQ++
Subjt:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-3353.42Show/hide
Query:  GPTCIAHYDENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQ
        G    A  D +D +   MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G   ++ +I+R+AMEY N+QL  IAEWP  Q QDA+ T  E+VRQL+
Subjt:  GPTCIAHYDENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQ

Query:  GISELSRLDRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD
         I EL+ +DR R MRI+MR+VDDMK F+++PD +K  YC++ILQ++
Subjt:  GISELSRLDRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-3966.19Show/hide
Query:  DENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRL
        D NDME P MYSQG+DM  DDIM  R  R +E R GSSGSKRK+GGQ +E  EIIR+ ME++ND+LKAI EW   Q QDAS   VEVVRQLQ I ELSR 
Subjt:  DENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRL

Query:  DRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDDA
        DR R M+ILM +VDDMK F+DI DE+KLDYCT+I QD+A
Subjt:  DRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDDA

KAA0065892.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-3356.3Show/hide
Query:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA
        D + P MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G   ++ +I+R+A+EY N+QL  IAEWP  Q QDA+ T  E+VRQL+ I EL+ +DR 
Subjt:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA

Query:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD
        R MRILMR+VDDMK F+++PD +K  YC++ILQ++
Subjt:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD

KAA0067571.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-3355.56Show/hide
Query:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA
        D + P MYS GL+MSPDD+M  R+ R+SE+R  SSGSKRKR G   ++ +I+R+A+EY N+QL  IAEWP  Q QDA+ T  E+VR L+ I EL+ +DR 
Subjt:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA

Query:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD
        R MRILMR+VDDMK F+++PD +K  YC++ILQ++
Subjt:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD

TrEMBL top hitse value%identityAlignment
A0A5A7TMW5 Retrotransposon protein4.0e-3354.81Show/hide
Query:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA
        D + P MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G  +++ +I+R+A+EY N+QL  IAEW   Q QDA+ T  E+VRQL+ I EL+ +DR 
Subjt:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA

Query:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD
        R MRI+MR+VDDMK F+++PD +K  YC++ILQ++
Subjt:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD

A0A5A7TYQ6 Retrotransposon protein1.4e-3353.42Show/hide
Query:  GPTCIAHYDENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQ
        G    A  D +D +   MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G   ++ +I+R+AMEY N+QL  IAEWP  Q QDA+ T  E+VRQL+
Subjt:  GPTCIAHYDENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQ

Query:  GISELSRLDRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD
         I EL+ +DR R MRI+MR+VDDMK F+++PD +K  YC++ILQ++
Subjt:  GISELSRLDRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD

A0A5A7V469 Retrotransposon protein5.7e-4066.19Show/hide
Query:  DENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRL
        D NDME P MYSQG+DM  DDIM  R  R +E R GSSGSKRK+GGQ +E  EIIR+ ME++ND+LKAI EW   Q QDAS   VEVVRQLQ I ELSR 
Subjt:  DENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRL

Query:  DRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDDA
        DR R M+ILM +VDDMK F+DI DE+KLDYCT+I QD+A
Subjt:  DRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDDA

A0A5A7VC47 Retrotransposon protein1.8e-3356.3Show/hide
Query:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA
        D + P MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G   ++ +I+R+A+EY N+QL  IAEWP  Q QDA+ T  E+VRQL+ I EL+ +DR 
Subjt:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA

Query:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD
        R MRILMR+VDDMK F+++PD +K  YC++ILQ++
Subjt:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD

A0A5A7VPS8 Retrotransposon protein3.0e-3355.56Show/hide
Query:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA
        D + P MYS GL+MSPDD+M  R+ R+SE+R  SSGSKRKR G   ++ +I+R+A+EY N+QL  IAEWP  Q QDA+ T  E+VR L+ I EL+ +DR 
Subjt:  DMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRLDRA

Query:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD
        R MRILMR+VDDMK F+++PD +K  YC++ILQ++
Subjt:  RCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCCGACGTGTATTGCCCACTACGACGAGAACGATATGGAGAACCCAACAATGTACAGTCAAGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATC
GGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGACATTGGAGGCGGCAGAAATTATTCGTAGTGCCATGGAATATGCTAATG
ACCAACTTAAGGCCATTGCAGAATGGCCCAAAGCACAATGGCAAGATGCAAGCGTGACATGTGTGGAAGTCGTTAGACAACTACAGGGAATTTCGGAGCTGAGTCGACTA
GATAGGGCTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAACCATTTATAGACATTCCGGACGAGGTTAAGTTGGATTACTGCACGGTCATACTCCAAGA
TGACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCCCGACGTGTATTGCCCACTACGACGAGAACGATATGGAGAACCCAACAATGTACAGTCAAGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATC
GGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGACATTGGAGGCGGCAGAAATTATTCGTAGTGCCATGGAATATGCTAATG
ACCAACTTAAGGCCATTGCAGAATGGCCCAAAGCACAATGGCAAGATGCAAGCGTGACATGTGTGGAAGTCGTTAGACAACTACAGGGAATTTCGGAGCTGAGTCGACTA
GATAGGGCTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAACCATTTATAGACATTCCGGACGAGGTTAAGTTGGATTACTGCACGGTCATACTCCAAGA
TGACGCTTGA
Protein sequenceShow/hide protein sequence
MRGPTCIAHYDENDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQTLEAAEIIRSAMEYANDQLKAIAEWPKAQWQDASVTCVEVVRQLQGISELSRL
DRARCMRILMRSVDDMKPFIDIPDEVKLDYCTVILQDDA