CuGenDBv2

Gene ID	PI0026491
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr06:13972008..13972490
RNA-Seq Expression	PI0026491
Synteny	PI0026491
Gene Ontology terms	NA
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048199.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.0e-36

70.45

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Query:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL
        M T SS  D P  + PIP  SS   N SVSTSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K++ S      SKINP  L
Subjt:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL

Query:  QWVSRDQALITLINATLSPSALAHVVCFAYSK
        QW+SRDQALITLINATLS SAL HVV   Y K
Subjt:  QWVSRDQALITLINATLSPSALAHVVCFAYSK

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.1e-38

65.38

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Query:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL
        M T SS  D P  + PIP  SS   N SV TSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K++ S      S+INPE L
Subjt:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL

Query:  QWVSRDQALITLINATLSPSALAHVVCFAYSKDLWLYLGNGIIPQTSYTTSLIYDL
        QW+SRDQALITLIN TLS SALAHVV    SK LWL L       +S T S I DL
Subjt:  QWVSRDQALITLINATLSPSALAHVVCFAYSKDLWLYLGNGIIPQTSYTTSLIYDL

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.0e-36

65.73

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Query:  MTTSSSDYDPTPTI-PIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL
        M T S   D + T  PIP  SS   N  V TSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K++ S      S+INPE L
Subjt:  MTTSSSDYDPTPTI-PIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL

Query:  QWVSRDQALITLINATLSPSALAHVVCFAYSKDLWLYLGNGII
        QW+SRDQALITLINATLS SAL HVV    SK LWL L   ++
Subjt:  QWVSRDQALITLINATLSPSALAHVVCFAYSKDLWLYLGNGII

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]

1.0e-36

70.45

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Query:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL
        M T SS  D P  + PIP  SS   N SVSTSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K++ S      SKINP  L
Subjt:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL

Query:  QWVSRDQALITLINATLSPSALAHVVCFAYSK
        QW+SRDQALITLINATLS SAL HVV   Y K
Subjt:  QWVSRDQALITLINATLSPSALAHVVCFAYSK

TYK11141.1 putative mitochondrial protein [Cucumis melo var. makuwa]

4.5e-37

74.78

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Query:  SRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALITLINATLSPSALA
        S N SV TSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K+  S      S+INPE +QW+SRDQALITLINATLS SALA
Subjt:  SRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALITLINATLSPSALA

Query:  HVVCFAYSKDLWLYL
        HVV    SK LWL L
Subjt:  HVVCFAYSKDLWLYL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U426 Putative mitochondrial protein

4.9e-37

70.45

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Query:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL
        M T SS  D P  + PIP  SS   N SVSTSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K++ S      SKINP  L
Subjt:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL

Query:  QWVSRDQALITLINATLSPSALAHVVCFAYSK
        QW+SRDQALITLINATLS SAL HVV   Y K
Subjt:  QWVSRDQALITLINATLSPSALAHVVCFAYSK

A0A5A7UZE5 Putative mitochondrial protein

5.2e-39

65.38

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Query:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL
        M T SS  D P  + PIP  SS   N SV TSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K++ S      S+INPE L
Subjt:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL

Query:  QWVSRDQALITLINATLSPSALAHVVCFAYSKDLWLYLGNGIIPQTSYTTSLIYDL
        QW+SRDQALITLIN TLS SALAHVV    SK LWL L       +S T S I DL
Subjt:  QWVSRDQALITLINATLSPSALAHVVCFAYSKDLWLYLGNGIIPQTSYTTSLIYDL

A0A5D3BEU0 Putative mitochondrial protein

4.9e-37

65.73

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Query:  MTTSSSDYDPTPTI-PIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL
        M T S   D + T  PIP  SS   N  V TSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K++ S      S+INPE L
Subjt:  MTTSSSDYDPTPTI-PIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL

Query:  QWVSRDQALITLINATLSPSALAHVVCFAYSKDLWLYLGNGII
        QW+SRDQALITLINATLS SAL HVV    SK LWL L   ++
Subjt:  QWVSRDQALITLINATLSPSALAHVVCFAYSKDLWLYLGNGII

A0A5D3CCL2 Retrotransposon protein

4.9e-37

70.45

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Query:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL
        M T SS  D P  + PIP  SS   N SVSTSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K++ S      SKINP  L
Subjt:  MTTSSSDYD-PTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQL

Query:  QWVSRDQALITLINATLSPSALAHVVCFAYSK
        QW+SRDQALITLINATLS SAL HVV   Y K
Subjt:  QWVSRDQALITLINATLSPSALAHVVCFAYSK

A0A5D3CH60 Putative mitochondrial protein

2.2e-37

74.78

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Query:  SRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALITLINATLSPSALA
        S N SV TSTLFLLSNICNLVP+RLDSTNYVLWKYQVSSILKAH LFGH+DD+LP P K+  S      S+INPE +QW+SRDQALITLINATLS SALA
Subjt:  SRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALITLINATLSPSALA

Query:  HVVCFAYSKDLWLYL
        HVV    SK LWL L
Subjt:  HVVCFAYSKDLWLYL

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.4e-04

28.04

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Query:  VSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALITLINATLSPSALAHVVCF
        V  +T  L  N+ N+   +L STNY++W  QV ++   + L G LD S   P   I +  AP   ++NP+  +W  +D+ + + +   +S S    V   
Subjt:  VSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALITLINATLSPSALAHVVCF

Query:  AYSKDLW
          +  +W
Subjt:  AYSKDLW

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

8.1e-05

28.97

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Query:  VSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALITLINATLSPSALAHVVCF
        V  +T  L  N+ N+   +L STNY++W  QV ++   + L G LD S P P   I +    A  ++NP+  +W  +D+ + + I   +S S    V   
Subjt:  VSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALITLINATLSPSALAHVVCF

Query:  AYSKDLW
          +  +W
Subjt:  AYSKDLW

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACCACCTCCAGCTCCGATTATGACCCCACCCCTACTATCCCTATCCCCACCGAATCTTCACCTTCAAGAAACACTTCTGTTTCCACTTCTACTCTTTTTTTGCTGTC
CAATATTTGTAATCTTGTGCCCGTTCGTCTAGATTCCACCAATTATGTTCTATGGAAGTATCAAGTCTCTTCCATACTAAAAGCTCACTATCTATTTGGTCATCTTGACG
ATTCTCTTCCCTATCCTAAAAAATATATTACCTCACTCATCGCTCCTGCCACCTCTAAAATCAACCCTGAACAGCTTCAATGGGTCTCTCGTGATCAAGCCCTTATTACC
TTAATCAATGCTACCTTGTCGCCTTCTGCCCTTGCCCATGTTGTTTGTTTTGCCTATTCAAAAGATCTATGGCTTTATCTTGGAAACGGTATTATTCCTCAAACATCATA
TACAACATCCTTGATTTACGATCTGCCCTTTAAGTTGGGATAA

mRNA sequence

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Protein sequence

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MTTSSSDYDPTPTIPIPTESSPSRNTSVSTSTLFLLSNICNLVPVRLDSTNYVLWKYQVSSILKAHYLFGHLDDSLPYPKKYITSLIAPATSKINPEQLQWVSRDQALIT
LINATLSPSALAHVVCFAYSKDLWLYLGNGIIPQTSYTTSLIYDLPFKLG

PI0026491 (gene) of Melon (PI 482460) v1 genome