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PI0026537 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026537
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:11663616..11665236
RNA-Seq ExpressionPI0026537
SyntenyPI0026537
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025369.1 uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa]3.8e-3150.97Show/hide
Query:  DRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------------------------------NEMKQQMSHFTNAI
        DRNTVD AAGGALADKT  E RELISRM ENSQ+FGNRASELDNSLTKE                                       MKQQ++  T AI
Subjt:  DRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------------------------------NEMKQQMSHFTNAI

Query:  SKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN---EFSKQEFDDELCLHEFD
        SK+EGKGKL A+ DHANVSAISLRSGKIL TP++ E+KVTS P+ L +K+E KEEK++T+  PS+SK      EK P+N+      K  F   L   + +
Subjt:  SKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN---EFSKQEFDDELCLHEFD

Query:  DEKEME
          KE E
Subjt:  DEKEME

KAA0040931.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.3e-3460.9Show/hide
Query:  RNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------NEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLR
        RNTVD  A GALADKTPT A+ELIS MAENSQ+FGNRASELDNSLTKE               E+KQQM+    AISK++GKGKLPA+ +HANVSAISLR
Subjt:  RNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------NEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLR

Query:  SGKILETP-SSEEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN
        SG+IL+TP + E+KVTS P+ L +K+E KEEK++TS  PS+SK      +K P+N+
Subjt:  SGKILETP-SSEEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN

KAA0041664.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-3147.69Show/hide
Query:  NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------------------------------------------NEMK
        N V+AAA GALA+KTPTEARELISRMAENSQ+FGNRA ELDNSLTKE                                                  EMK
Subjt:  NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------------------------------------------NEMK

Query:  QQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN---EFSKQEF
        QQM+ FT AISK++GKGKLPA+PD+ANVS ISLRSGKI++TP++ E+KVTS P+ L +K+E KEEK++ + LPS+SK      +K P+N+      K  F
Subjt:  QQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN---EFSKQEF

Query:  DDELCLHEFDDEKEME
           L   + +  KE E
Subjt:  DDELCLHEFDDEKEME

KAA0060357.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.5e-3247.14Show/hide
Query:  MDRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------------------------------------------
        +D NTVDAAAGGALADKTPTEARELISR A+NSQ+FGNRAS+LDNSLTKE                                                  
Subjt:  MDRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------------------------------------------

Query:  ----------------NEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELH
                         EMKQQM+  T AISK++GKGKLPA+PDHANVS ISLRSGKIL+TP++ E+KVTS P+ L +K+E +EE ++T+ LP +SK   
Subjt:  ----------------NEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELH

Query:  DELEKLPINN
          ++K P+N+
Subjt:  DELEKLPINN

KAA0061336.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.7e-3277.88Show/hide
Query:  NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKENEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSSEEKVT
        NTVDAAA GALADKTPT+ARELI RM ENSQ+FGNRASELDNSLTK  EMKQQMS  T AISK+ GKGKLPA+PDHANVS ISLRSGKIL+TP+++EK  
Subjt:  NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKENEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSSEEKVT

Query:  STPI
         + I
Subjt:  STPI

TrEMBL top hitse value%identityAlignment
A0A5A7TE06 Retrotransposon gag protein1.9e-3147.69Show/hide
Query:  NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------------------------------------------NEMK
        N V+AAA GALA+KTPTEARELISRMAENSQ+FGNRA ELDNSLTKE                                                  EMK
Subjt:  NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------------------------------------------NEMK

Query:  QQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN---EFSKQEF
        QQM+ FT AISK++GKGKLPA+PD+ANVS ISLRSGKI++TP++ E+KVTS P+ L +K+E KEEK++ + LPS+SK      +K P+N+      K  F
Subjt:  QQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN---EFSKQEF

Query:  DDELCLHEFDDEKEME
           L   + +  KE E
Subjt:  DDELCLHEFDDEKEME

A0A5A7V0M2 Retrotransposon gag protein1.7e-3247.14Show/hide
Query:  MDRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------------------------------------------
        +D NTVDAAAGGALADKTPTEARELISR A+NSQ+FGNRAS+LDNSLTKE                                                  
Subjt:  MDRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------------------------------------------

Query:  ----------------NEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELH
                         EMKQQM+  T AISK++GKGKLPA+PDHANVS ISLRSGKIL+TP++ E+KVTS P+ L +K+E +EE ++T+ LP +SK   
Subjt:  ----------------NEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELH

Query:  DELEKLPINN
          ++K P+N+
Subjt:  DELEKLPINN

A0A5A7V4B8 Retrotransposon gag protein3.7e-3277.88Show/hide
Query:  NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKENEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSSEEKVT
        NTVDAAA GALADKTPT+ARELI RM ENSQ+FGNRASELDNSLTK  EMKQQMS  T AISK+ GKGKLPA+PDHANVS ISLRSGKIL+TP+++EK  
Subjt:  NTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKENEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSSEEKVT

Query:  STPI
         + I
Subjt:  STPI

A0A5D3CJL9 Transposon Ty3-I Gag-Pol polyprotein3.1e-3460.9Show/hide
Query:  RNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------NEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLR
        RNTVD  A GALADKTPT A+ELIS MAENSQ+FGNRASELDNSLTKE               E+KQQM+    AISK++GKGKLPA+ +HANVSAISLR
Subjt:  RNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE--------------NEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLR

Query:  SGKILETP-SSEEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN
        SG+IL+TP + E+KVTS P+ L +K+E KEEK++TS  PS+SK      +K P+N+
Subjt:  SGKILETP-SSEEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN

A0A5D3DIP6 Retrotrans_gag domain-containing protein1.9e-3150.97Show/hide
Query:  DRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------------------------------NEMKQQMSHFTNAI
        DRNTVD AAGGALADKT  E RELISRM ENSQ+FGNRASELDNSLTKE                                       MKQQ++  T AI
Subjt:  DRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKE-------------------------------------NEMKQQMSHFTNAI

Query:  SKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN---EFSKQEFDDELCLHEFD
        SK+EGKGKL A+ DHANVSAISLRSGKIL TP++ E+KVTS P+ L +K+E KEEK++T+  PS+SK      EK P+N+      K  F   L   + +
Subjt:  SKLEGKGKLPAKPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLKTSTLPSSSKELHDELEKLPINN---EFSKQEFDDELCLHEFD

Query:  DEKEME
          KE E
Subjt:  DEKEME

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCATTGGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAAAATTTTGG
AAATAGGGCATCCGAGCTCGACAATTCATTGACTAAGGAGAATGAAATGAAACAACAGATGTCTCATTTTACAAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTC
CGGCTAAGCCTGACCATGCCAACGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAA
AATAAAGATGAGAAAAAGGAAGAAAAATTAAAAACTAGTACTTTACCATCTTCTTCTAAAGAATTGCATGATGAATTAGAAAAATTGCCTATTAATAATGAATTTTCTAA
ACAAGAGTTTGATGATGAGCTTTGTTTACATGAGTTTGATGATGAAAAAGAGATGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCATTGGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAAAATTTTGG
AAATAGGGCATCCGAGCTCGACAATTCATTGACTAAGGAGAATGAAATGAAACAACAGATGTCTCATTTTACAAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTC
CGGCTAAGCCTGACCATGCCAACGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAA
AATAAAGATGAGAAAAAGGAAGAAAAATTAAAAACTAGTACTTTACCATCTTCTTCTAAAGAATTGCATGATGAATTAGAAAAATTGCCTATTAATAATGAATTTTCTAA
ACAAGAGTTTGATGATGAGCTTTGTTTACATGAGTTTGATGATGAAAAAGAGATGGAATAA
Protein sequenceShow/hide protein sequence
MDRNTVDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKENEMKQQMSHFTNAISKLEGKGKLPAKPDHANVSAISLRSGKILETPSSEEKVTSTPILLE
NKDEKKEEKLKTSTLPSSSKELHDELEKLPINNEFSKQEFDDELCLHEFDDEKEME