CuGenDBv2

Gene ID	PI0026554
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr04:14927528..14927761
RNA-Seq Expression	PI0026554
Synteny	PI0026554
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0034061 - DNA polymerase activity (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

8.7e-21

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK
        MDVTTTFLHGELEEVIY+AQ KGYEVKGKEDMVC LHKS+YGL QS RQW               NSYDACVYWK
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.3e-20

70.67

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK
        MDVTT FLHGELEEVIY+AQ KGYEVKGKEDMVC LHKS+YGL QS RQW               NSYDACVYWK
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK

KAA0067243.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

5.7e-20

71.05

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWKL
        MDVTTTFLHGELEEVIY+AQ KGYEVKGKEDMV  LHKS+YGL QS RQW               NSYDACVYWKL
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWKL

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

3.3e-20

70.67

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK
        MDVTT FLHGELEEVIY+AQ KGYEVKGKEDMVC LHKS+YGL QS RQW               NSYDACVYWK
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.3e-20

70.67

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK
        MDVTT FLHGELEEVIY+AQ KGYEVKGKEDMVC LHKS+YGL QS RQW               NSYDACVYWK
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

4.2e-21

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK
        MDVTTTFLHGELEEVIY+AQ KGYEVKGKEDMVC LHKS+YGL QS RQW               NSYDACVYWK
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK

A0A5A7UB25 Putative gag-pol polyprotein

1.6e-20

70.67

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK
        MDVTT FLHGELEEVIY+AQ KGYEVKGKEDMVC LHKS+YGL QS RQW               NSYDACVYWK
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK

A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class

2.7e-20

71.05

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWKL
        MDVTTTFLHGELEEVIY+AQ KGYEVKGKEDMV  LHKS+YGL QS RQW               NSYDACVYWKL
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWKL

A0A5D3CTV2 Putative polyprotein

1.6e-20

70.67

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK
        MDVTT FLHGELEEVIY+AQ KGYEVKGKEDMVC LHKS+YGL QS RQW               NSYDACVYWK
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK

A0A5D3DNU1 Putative gag-pol polyprotein

1.6e-20

70.67

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK
        MDVTT FLHGELEEVIY+AQ KGYEVKGKEDMVC LHKS+YGL QS RQW               NSYDACVYWK
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW---------------NSYDACVYWK

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-12

49.35

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW--------------NSY-DACVYWKLF
        +DV T FLHG+LEE IY+ Q +G+EV GK+ MVC L+KS+YGL Q+ RQW               +Y D CVY+K F
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQW--------------NSY-DACVYWKLF

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.0e-07

44.44

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Query:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDM----VCHLHKSIYGLYQSSRQW
        +D++  FL+G+L+E IY+    GY  +  + +    VC+L KSIYGL Q+SRQW
Subjt:  MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDM----VCHLHKSIYGLYQSSRQW

Sequences

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CDS sequence

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ATGGACGTCACCACAACATTCCTTCATGGAGAATTGGAGGAGGTGATTTACTTGGCTCAACATAAGGGCTATGAGGTGAAGGGTAAGGAAGACATGGTTTGTCATCTTCA
CAAGTCCATCTATGGACTGTATCAATCCTCGAGACAGTGGAACTCATATGATGCTTGCGTTTACTGGAAACTATTTTAG

mRNA sequence

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ATGGACGTCACCACAACATTCCTTCATGGAGAATTGGAGGAGGTGATTTACTTGGCTCAACATAAGGGCTATGAGGTGAAGGGTAAGGAAGACATGGTTTGTCATCTTCA
CAAGTCCATCTATGGACTGTATCAATCCTCGAGACAGTGGAACTCATATGATGCTTGCGTTTACTGGAAACTATTTTAG

Protein sequence

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MDVTTTFLHGELEEVIYLAQHKGYEVKGKEDMVCHLHKSIYGLYQSSRQWNSYDACVYWKLF

PI0026554 (gene) of Melon (PI 482460) v1 genome