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PI0026558 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026558
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationchr06:4124519..4125048
RNA-Seq ExpressionPI0026558
SyntenyPI0026558
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]3.1e-5699.12Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLAGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLAGSR

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]1.4e-5396.52Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EQLMMIYEENLAGSR
        EQLMMIYEENL GSR
Subjt:  EQLMMIYEENLAGSR

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]5.8e-5597.37Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLAGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLAGSR

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]7.6e-5598.26Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EQLMMIYEENLAGSR
        EQLMMIYEENL GSR
Subjt:  EQLMMIYEENLAGSR

XP_038881388.1 pre-rRNA-processing protein TSR2 homolog [Benincasa hispida]1.3e-5192.98Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGLTSTNYKAGSVS+LQ AISSVFSRWDGLQMAIENQWGGRDSHQKSLNL SDVF+WFS SKPPLYVEDLE LLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLAGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLAGSR

TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein1.5e-5699.12Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLAGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLAGSR

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X22.8e-5597.37Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLAGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLAGSR

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X17.0e-5496.52Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EQLMMIYEENLAGSR
        EQLMMIYEENL GSR
Subjt:  EQLMMIYEENLAGSR

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X22.8e-5597.37Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEPIDGLTSTNYKAGSVS+LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFS+SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLAGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLAGSR

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog5.5e-5191.23Show/hide
Query:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MEP DGL STNYKAGSVS LQ AISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLAGSR
        QLMMIYEE+L GSR
Subjt:  QLMMIYEENLAGSR

SwissProt top hitse value%identityAlignment
Q06672 Pre-rRNA-processing protein TSR26.8e-0633.68Show/hide
Query:  SNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLS----FNTEIEDGSIEQVAEQLMMIYEE
        +  ++ +S V  +WD L +A+EN WGG DS +K   +   V   F + K    V D   L+ ETLL +    F T +ED S   +A +++ IY +
Subjt:  SNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLS----FNTEIEDGSIEQVAEQLMMIYEE

Q3KRG3 Pre-rRNA-processing protein TSR2 homolog1.2e-0530.23Show/hide
Query:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEE
        A+ +V   W  LQ+A++N +GG  S QK+  +V  +  +F+     L  +++E+ + E +   F+T ++DGS+ QVA+Q+  ++++
Subjt:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEE

Q3T090 Pre-rRNA-processing protein TSR2 homolog8.0e-0732.61Show/hide
Query:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLAGSR
        A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L ++++E+ L E ++  F+T +EDGS+ QV++QL  ++     G R
Subjt:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLAGSR

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog6.1e-0734.52Show/hide
Query:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIY
        A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+ QV++QL  ++
Subjt:  AISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIY

Q969E8 Pre-rRNA-processing protein TSR2 homolog4.0e-0633.73Show/hide
Query:  ISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIY
        + +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L ++++E+ L E L   F+T +EDGS+ QV++QL  ++
Subjt:  ISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIY

Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region2.3e-2560.42Show/hide
Query:  SNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLAGS
        S LQ  I  + SRW GLQMA++NQWGG DS +KS  L  ++F   S S   + VE++ENLLHE+LLLSFNTEIEDGSIE+VAEQLM+++EE+L G+
Subjt:  SNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLAGS

AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region5.0e-1240.62Show/hide
Query:  LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENL--LHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLAGS
        L+  I  +  RW  ++ A+EN WGGRDS  K+   V+ VF +F  SK P  V+D+E L  L +  L   NT  EDGS+++VA  L+ +YE+   G+
Subjt:  LQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENL--LHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLAGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCAATTGATGGATTAACCTCAACCAATTACAAGGCGGGATCTGTCTCCAACCTCCAAATGGCCATTTCGTCAGTGTTTTCACGGTGGGACGGCCTTCAAATGGC
CATTGAAAATCAATGGGGAGGTCGCGACTCTCACCAAAAATCACTGAATCTCGTCTCTGATGTCTTCTCTTGGTTCTCTCATTCCAAACCTCCTTTATACGTGGAAGATC
TGGAAAATTTGCTCCATGAAACTCTATTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACAATTGATGATGATATACGAAGAAAATTTG
GCGGGAAGTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCAATTGATGGATTAACCTCAACCAATTACAAGGCGGGATCTGTCTCCAACCTCCAAATGGCCATTTCGTCAGTGTTTTCACGGTGGGACGGCCTTCAAATGGC
CATTGAAAATCAATGGGGAGGTCGCGACTCTCACCAAAAATCACTGAATCTCGTCTCTGATGTCTTCTCTTGGTTCTCTCATTCCAAACCTCCTTTATACGTGGAAGATC
TGGAAAATTTGCTCCATGAAACTCTATTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACAATTGATGATGATATACGAAGAAAATTTG
GCGGGAAGTCGTTAG
Protein sequenceShow/hide protein sequence
MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENL
AGSR