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PI0026564 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026564
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:27971985..27972377
RNA-Seq ExpressionPI0026564
SyntenyPI0026564
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040138.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.5e-3867.69Show/hide
Query:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN
        MEE TY+ L++NITDNVLRQVI E T +    KL A+Y KK+LP+K++MREKLFSFKMN++K L+ENLDEFKKLTN  NQ GEKL  ES+  I INS+H+
Subjt:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN

Query:  TYKEVKTTLKYGKETITVNSVITALKSKEL
        TYKEVK+TLKYG+E++ V+ VITALKSKEL
Subjt:  TYKEVKTTLKYGKETITVNSVITALKSKEL

KAA0043186.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.9e-3881.98Show/hide
Query:  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVN
        +VIEET AFATW KLK++Y+KK+LPNKMF+REKLFSFKMN+NKNLDENLDEFKK TNALNQT EKLG   +  ILINSIH+TYKEVKT LKYG+ETITVN
Subjt:  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVN

Query:  SVITALKSKEL
        SVITALKSKEL
Subjt:  SVITALKSKEL

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.4e-5082.31Show/hide
Query:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN
        +EE  Y TL+MNITDNVLRQVIEETTAFATW KLK++Y+KK+LPNKMF++EKLFSFK N+NKNLDENLDEFKKLTNALNQTGEKLG E++  ILINSIH+
Subjt:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN

Query:  TYKEVKTTLKYGKETITVNSVITALKSKEL
        TYKEVKT LKYG+ETITVNSVIT LKSKEL
Subjt:  TYKEVKTTLKYGKETITVNSVITALKSKEL

TYK12279.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.9e-3881.98Show/hide
Query:  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVN
        +VIEET AFATW KLK++Y+KK+LPNKMF+REKLFSFKMN+NKNLDENLDEFKK TNALNQT EKLG   +  ILINSIH+TYKEVKT LKYG+ETITVN
Subjt:  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVN

Query:  SVITALKSKEL
        SVITALKSKEL
Subjt:  SVITALKSKEL

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.5e-4881.54Show/hide
Query:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN
        +EE  Y TL+MNITDNVLRQVIEETT FATW  LK++Y+KK+L NKMF+REKLFSFKMN+NKNLDENLDEFKKLTNALNQT EKLG ES+  ILIN IH+
Subjt:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN

Query:  TYKEVKTTLKYGKETITVNSVITALKSKEL
        TYKEVKT+LKYG+ETITVNSVITALKSKEL
Subjt:  TYKEVKTTLKYGKETITVNSVITALKSKEL

TrEMBL top hitse value%identityAlignment
A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-3867.69Show/hide
Query:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN
        MEE TY+ L++NITDNVLRQVI E T +    KL A+Y KK+LP+K++MREKLFSFKMN++K L+ENLDEFKKLTN  NQ GEKL  ES+  I INS+H+
Subjt:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN

Query:  TYKEVKTTLKYGKETITVNSVITALKSKEL
        TYKEVK+TLKYG+E++ V+ VITALKSKEL
Subjt:  TYKEVKTTLKYGKETITVNSVITALKSKEL

A0A5A7TMB4 Pentatricopeptide repeat-containing protein9.4e-3981.98Show/hide
Query:  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVN
        +VIEET AFATW KLK++Y+KK+LPNKMF+REKLFSFKMN+NKNLDENLDEFKK TNALNQT EKLG   +  ILINSIH+TYKEVKT LKYG+ETITVN
Subjt:  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVN

Query:  SVITALKSKEL
        SVITALKSKEL
Subjt:  SVITALKSKEL

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-5082.31Show/hide
Query:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN
        +EE  Y TL+MNITDNVLRQVIEETTAFATW KLK++Y+KK+LPNKMF++EKLFSFK N+NKNLDENLDEFKKLTNALNQTGEKLG E++  ILINSIH+
Subjt:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN

Query:  TYKEVKTTLKYGKETITVNSVITALKSKEL
        TYKEVKT LKYG+ETITVNSVIT LKSKEL
Subjt:  TYKEVKTTLKYGKETITVNSVITALKSKEL

A0A5D3CPM8 Pentatricopeptide repeat-containing protein9.4e-3981.98Show/hide
Query:  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVN
        +VIEET AFATW KLK++Y+KK+LPNKMF+REKLFSFKMN+NKNLDENLDEFKK TNALNQT EKLG   +  ILINSIH+TYKEVKT LKYG+ETITVN
Subjt:  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVN

Query:  SVITALKSKEL
        SVITALKSKEL
Subjt:  SVITALKSKEL

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-4881.54Show/hide
Query:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN
        +EE  Y TL+MNITDNVLRQVIEETT FATW  LK++Y+KK+L NKMF+REKLFSFKMN+NKNLDENLDEFKKLTNALNQT EKLG ES+  ILIN IH+
Subjt:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN

Query:  TYKEVKTTLKYGKETITVNSVITALKSKEL
        TYKEVKT+LKYG+ETITVNSVITALKSKEL
Subjt:  TYKEVKTTLKYGKETITVNSVITALKSKEL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.9e-1431.01Show/hide
Query:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN
        ++E     + ++++D+V+  +I+E TA   W +L+++Y  K L NK++++++L++  M++  N   +L+ F  L   L   G K+ EE K ++L+NS+ +
Subjt:  MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHN

Query:  TYKEVKTTLKYGKETITVNSVITALKSKE
        +Y  + TT+ +GK TI +  V +AL   E
Subjt:  TYKEVKTTLKYGKETITVNSVITALKSKE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGGCAACTTACGATACACTGGTTATGAATATTACTGATAATGTGCTAAGACAAGTAATTGAAGAAACCACTGCTTTCGCTACTTGGTTGAAATTGAAGGCAAT
GTATAAAAAGAAAAACCTACCAAACAAAATGTTCATGAGGGAGAAATTATTTTCATTTAAAATGAATAAGAACAAGAATCTTGATGAAAATTTAGATGAGTTCAAGAAAC
TTACCAATGCTCTTAATCAAACTGGGGAGAAGTTGGGTGAGGAAAGTAAAGTTGTCATTCTTATTAATTCAATTCATAACACCTACAAAGAAGTGAAGACAACTCTGAAG
TATGGTAAAGAGACAATCACTGTGAATTCAGTCATTACAGCTCTAAAAAGCAAGGAACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGGCAACTTACGATACACTGGTTATGAATATTACTGATAATGTGCTAAGACAAGTAATTGAAGAAACCACTGCTTTCGCTACTTGGTTGAAATTGAAGGCAAT
GTATAAAAAGAAAAACCTACCAAACAAAATGTTCATGAGGGAGAAATTATTTTCATTTAAAATGAATAAGAACAAGAATCTTGATGAAAATTTAGATGAGTTCAAGAAAC
TTACCAATGCTCTTAATCAAACTGGGGAGAAGTTGGGTGAGGAAAGTAAAGTTGTCATTCTTATTAATTCAATTCATAACACCTACAAAGAAGTGAAGACAACTCTGAAG
TATGGTAAAGAGACAATCACTGTGAATTCAGTCATTACAGCTCTAAAAAGCAAGGAACTTTAA
Protein sequenceShow/hide protein sequence
MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLK
YGKETITVNSVITALKSKEL