; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0026574 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026574
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr05:12261901..12262158
RNA-Seq ExpressionPI0026574
SyntenyPI0026574
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0008622 - epsilon DNA polymerase complex (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054183.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.0e-2775Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD+ +RELKF VGDE +LKLRPYRQRSLARKR EKLAP+FYG Y+++EEIGEVAYR+ LPP A+IHNVFHVSQLKLKLG+  ++
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

KAA0062449.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]3.5e-2875Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD+ +RELKF VGDE +LKLRPYRQRSLARKR EKLAP+FYG Y+++EEIGEVAYR+ LPP+A+IHNVFHVSQLKLKLG+  ++
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

KAA0066550.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.7e-2873.81Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD+ ++ELKF VGDE +LKLRPYRQRSLARKR EKLAP+FYG Y+++EEIGEVAYR+ LPP+A+IHNVFHVSQLKLKLG+  ++
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]7.7e-2878.75Show/hide
Query:  MADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLG
        MAD K+RELKF VGDE +LKLRPYRQ SLARKR EKLAP+FYG Y+++EEIGEVAYR+QLPP+A IH+VFH+SQLKLKLG
Subjt:  MADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLG

TYJ98047.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]3.5e-2875Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD+ +RELKF VGDE +LKLRPYRQRSLARKR EKLAP+FYG Y+++EEIGEVAYR+ LPP+A+IHNVFHVSQLKLKLG+  ++
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

TrEMBL top hitse value%identityAlignment
A0A5A7UXB4 Ty3/gypsy retrotransposon protein6.4e-2873.81Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD K+RELKF VGDE +LKLRPYRQRSLARKR EKLAPR+YG Y+++E IGEVAYR+ LPP+A IHNVFH+SQLKLKLG++  +
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

A0A5A7VHA7 Ty3/gypsy retrotransposon protein3.7e-2873.81Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD+ ++ELKF VGDE +LKLRPYRQRSLARKR EKLAP+FYG Y+++EEIGEVAYR+ LPP+A+IHNVFHVSQLKLKLG+  ++
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

A0A5D3BFZ9 Transposon Tf2-6 polyprotein1.7e-2875Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD+ +RELKF VGDE +LKLRPYRQRSLARKR EKLAP+FYG Y+++EEIGEVAYR+ LPP+A+IHNVFHVSQLKLKLG+  ++
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

A0A5D3CUI1 Transposon Ty3-G Gag-Pol polyprotein4.9e-2875Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD+ +RELKF VGDE +LKLRPYRQRSLARKR EKLAP+FYG Y+++EEIGEVAYR+ LPP A+IHNVFHVSQLKLKLG+  ++
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

A0A5D3DUN8 Transposon Ty3-G Gag-Pol polyprotein1.7e-2875Show/hide
Query:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI
        AD+ +RELKF VGDE +LKLRPYRQRSLARKR EKLAP+FYG Y+++EEIGEVAYR+ LPP+A+IHNVFHVSQLKLKLG+  ++
Subjt:  ADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGACATGAAGAAGAGAGAGCTGAAATTTAGTGTAGGGGATGAAGAATTTTTGAAGCTACGGCCTTACAGACAGAGGTCCTTAGCAAGAAAAAGATATGAGAAGCT
GGCTCCTCGTTTCTACGGCTCATACAAAGTTTTGGAGGAAATCGGAGAAGTAGCCTACAGAATACAACTACCTCCACAAGCCATGATCCATAATGTTTTCCATGTTTCTC
AGTTGAAACTCAAACTCGGAGACAAGCAGAAAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGACATGAAGAAGAGAGAGCTGAAATTTAGTGTAGGGGATGAAGAATTTTTGAAGCTACGGCCTTACAGACAGAGGTCCTTAGCAAGAAAAAGATATGAGAAGCT
GGCTCCTCGTTTCTACGGCTCATACAAAGTTTTGGAGGAAATCGGAGAAGTAGCCTACAGAATACAACTACCTCCACAAGCCATGATCCATAATGTTTTCCATGTTTCTC
AGTTGAAACTCAAACTCGGAGACAAGCAGAAAATATAA
Protein sequenceShow/hide protein sequence
MADMKKRELKFSVGDEEFLKLRPYRQRSLARKRYEKLAPRFYGSYKVLEEIGEVAYRIQLPPQAMIHNVFHVSQLKLKLGDKQKI