CuGenDBv2

Gene ID	PI0026592
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome location	chr01:7752923..7754454
RNA-Seq Expression	PI0026592
Synteny	PI0026592
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040790.1 photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa]

4.1e-99

92.72

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        MAAFIQAKICP TI TLDRSLISENG KL SRSQV LPSQE+CRRHL+WNGMSLVVFLTFNNGLTPS A AEEMPNN EEEDNGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGKVLPKAYLKS REVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAKAGPSA LPEAVKSDILDDL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        KAE SL
Subjt:  KAEESL

XP_008447146.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo]

1.1e-99

93.2

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        MAAFIQAKICP TISTLDRSLISENG KL SRSQV LPSQE+CRRHL+WNGMSLVVFLTFNNGLTPS A AEEMPNN EEEDNGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGKVLPKAYLKS REVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAKAGPSA LPEAVKSDILDDL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        KAE SL
Subjt:  KAEESL

XP_011659022.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus]

5.3e-99

92.72

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        MAAFI AKICPTTISTLDRSLISE G KL SRS+VVLP QEVCRRHL+WNGMSLVVFLTFNNGLTPS AQAEEMPNN EEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGK+LPKAYLKS REVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSA LPEAVKSDILDDL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        K EESL
Subjt:  KAEESL

XP_011659023.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus]

1.3e-97

92.72

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        MAAFI AKICPTTISTLDRSLISE G KL SRS+VVLP QEVCRRHL+WNGMSLVVFLTFNNGLTPS AQAEEMPNN EEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGK+LPKAYLKS REVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSA LPEAVKSDILDDL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        K EESL
Subjt:  KAEESL

XP_038875361.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]

1.2e-93

89.81

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        MAAFIQA ICPTTISTLDR+L SENGHKLRSRSQVVLPSQEVCRRHL+ +GMSLVVFLT NNGLTPS A+AEE PN+ EEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGKVLPKAYLKS REVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG++TVV+EESYVVLEKAI+SLAGFYAKAGPSA LPEAVKSDILDDL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        KAEE L
Subjt:  KAEESL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K400 Uncharacterized protein

2.6e-99

92.72

Show/hide

Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        MAAFI AKICPTTISTLDRSLISE G KL SRS+VVLP QEVCRRHL+WNGMSLVVFLTFNNGLTPS AQAEEMPNN EEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGK+LPKAYLKS REVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSA LPEAVKSDILDDL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        K EESL
Subjt:  KAEESL

A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

5.2e-100

93.2

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        MAAFIQAKICP TISTLDRSLISENG KL SRSQV LPSQE+CRRHL+WNGMSLVVFLTFNNGLTPS A AEEMPNN EEEDNGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGKVLPKAYLKS REVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAKAGPSA LPEAVKSDILDDL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        KAE SL
Subjt:  KAEESL

A0A5D3D0K6 Photosystem II D1 processing protein PSB27-H2

2.0e-99

92.72

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        MAAFIQAKICP TI TLDRSLISENG KL SRSQV LPSQE+CRRHL+WNGMSLVVFLTFNNGLTPS A AEEMPNN EEEDNGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGKVLPKAYLKS REVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAKAGPSA LPEAVKSDILDDL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        KAE SL
Subjt:  KAEESL

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.1e-89

86.41

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        M AFIQAKICP TISTLDR + SENGHKLRSRSQVVLPSQE+CRR L+ NGMS V FLTFNN LTP  A+AEEMPN+KEEE+NGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGKVLPKAYLKS REVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q VVQEESY VLEKAIRSLAGFYAKAGPSA LPE VKSDIL+DL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        KAEE L
Subjt:  KAEESL

A0A6J1KWY8 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

7.8e-88

84.95

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Query:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK
        M AFIQAKICP TIST DR + SENGHKLRS SQVVLPSQE+CRR L+ NGMSLV FLTFNN LTP  A+AEE PN+KEEE+NGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SGKVLPKAYLKS REVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q V+QEESY VLEKAIRSLAGFYAKAGPSA LPE VKSDIL+DL 
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        KAEE L
Subjt:  KAEESL

SwissProt top hits

e value

%identity

Alignment

P74367 Photosystem II lipoprotein Psb27

3.6e-05

30.19

Show/hide

Query:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY
        SG  L   Y +    V+ TLRE++ + P+D    +   D A+  I DY+S +  K      +S+  ++ A+ SLAG+Y   G +  +PE +K  +  +  
Subjt:  SGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLY

Query:  KAEESL
        +AE S+
Subjt:  KAEESL

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

3.8e-47

71.74

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Query:  AQAEEMPNNKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLE
        AQA E    K +E  GV+G  K++FDPNERTKSGK LPKAYLKS REVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW G++TV  EESYV LE
Subjt:  AQAEEMPNNKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLE

Query:  KAIRSLAGFYAKAGPSASLPEAVKSDILDDLYKAEESL
          IR+LA FY+KAGPSA LP+ VK++ILDDL KAEE L
Subjt:  KAIRSLAGFYAKAGPSASLPEAVKSDILDDLYKAEESL

Arabidopsis top hits

e value

%identity

Alignment

AT1G05385.1 photosystem II 11 kDa protein-related

2.7e-48

71.74

Show/hide

Query:  AQAEEMPNNKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLE
        AQA E    K +E  GV+G  K++FDPNERTKSGK LPKAYLKS REVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW G++TV  EESYV LE
Subjt:  AQAEEMPNNKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLE

Query:  KAIRSLAGFYAKAGPSASLPEAVKSDILDDLYKAEESL
          IR+LA FY+KAGPSA LP+ VK++ILDDL KAEE L
Subjt:  KAIRSLAGFYAKAGPSASLPEAVKSDILDDLYKAEESL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGCATTTATTCAAGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAAAATGGGCATAAACTACGATCCAGGTCTCAAGTAGTGCT
TCCATCTCAAGAAGTTTGTAGACGTCATTTGATATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTCCGGCCCAGGCCGAAGAAA
TGCCAAATAACAAGGAGGAAGAGGATAATGGAGTCATTGGGACGATCAAATCAATATTTGATCCAAATGAGAGAACTAAATCAGGGAAAGTATTGCCAAAGGCTTACTTG
AAGTCTGTAAGGGAGGTGGTGAAGACGCTGCGTGAATCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTCGTGA
CTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTGCTAGAGAAAGCAATTAGGTCATTGGCAGGCTTTTATGCAAAGGCTGGGCCAT
CTGCGTCACTGCCAGAAGCTGTTAAATCTGATATTCTGGATGATTTGTATAAGGCTGAAGAATCCTTGTAA

mRNA sequence

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Protein sequence

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MAAFIQAKICPTTISTLDRSLISENGHKLRSRSQVVLPSQEVCRRHLIWNGMSLVVFLTFNNGLTPSPAQAEEMPNNKEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYL
KSVREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSASLPEAVKSDILDDLYKAEESL

PI0026592 (gene) of Melon (PI 482460) v1 genome