; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0026644 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026644
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptioncold shock domain-containing protein 3
Genome locationchr06:30389887..30391213
RNA-Seq ExpressionPI0026644
SyntenyPI0026644
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146143.1 cold shock domain-containing protein 3 [Cucumis sativus]3.0e-12495.79Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF  GGGGRGGRGGGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGCFTCGELGHLARDCPRGNS-GGGGGGGGGAGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGCFTCGE+GHLARDCPRGNS GGGGGGGGG GACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGCFTCGELGHLARDCPRGNS-GGGGGGGGGAGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGS-GGGGGRF--GGGGGGGSNTCFNCG
        GAGGGS GGGGGGGGCFNCGEYGHIARDCQNE+RGS GGGGGRF  GGGGGGGSNTCFNCG
Subjt:  GAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGS-GGGGGRF--GGGGGGGSNTCFNCG

XP_008448549.1 PREDICTED: cold shock domain-containing protein 3 [Cucumis melo]1.9e-12694.64Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-----GGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF     GGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-----GGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR--GGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR  GGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGGG G GACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR--GGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        NRGGAGGGS  GGGGGGGCFNCGEYGHIARDCQNE+RGSGGGGGRFGGGGGGGSNTCFNCG
Subjt:  NRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

XP_022923189.1 cold shock domain-containing protein 3-like [Cucurbita moschata]5.0e-11992.13Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGG  G  GGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYG

Query:  FGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNRGGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGGG G GACYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        GS   GGGGGGCFNCGEYGH+ARDCQNE+RGS  GGGRF   GGGG+NTCFNCG
Subjt:  GSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

XP_023540854.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]1.2e-12093.73Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGG  GGRGG GGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYG

Query:  FGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGG-GGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAG
        FGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDC RPSNRGGGGG GGGCFTCGE+GHLARDCPRGNSGGGGGG GG G CYNCGGFGHLARDCNRGGAG
Subjt:  FGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGG-GGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        GGSGGGGGGGGGCFNCGEYGH+ARDCQNE+R S GGGGRFGGGGGGG+NTCFNCG
Subjt:  GGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

XP_038876618.1 cold shock domain-containing protein 3 [Benincasa hispida]1.6e-12294.23Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-GGGGRGGRGGGGGGGY
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGRGGRGGGGGGGY
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-GGGGRGGRGGGGGGGY

Query:  GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGCFTCGELGHLARDCPRGNS-GGGGGGGGGAGACYNCGGFGHLARDCNRGG
        GFGGWRGGDRRNGNSGAGGG CYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGE+GHLARDCPRGNS GGGGGGGGGAGACYNCGGFGHLARDCNRGG
Subjt:  GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGCFTCGELGHLARDCPRGNS-GGGGGGGGGAGACYNCGGFGHLARDCNRGG

Query:  AGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGG---GGGGGSNTCFNCG
        AGGGS    GGGGGCFNCGEYGHIARDCQNE+RGSGGGGGRFGG   GGGGG NTCFNCG
Subjt:  AGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGG---GGGGGSNTCFNCG

TrEMBL top hitse value%identityAlignment
A0A0A0L4X7 Uncharacterized protein1.5e-12495.79Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF  GGGGRGGRGGGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGCFTCGELGHLARDCPRGNS-GGGGGGGGGAGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGCFTCGE+GHLARDCPRGNS GGGGGGGGG GACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGCFTCGELGHLARDCPRGNS-GGGGGGGGGAGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGS-GGGGGRF--GGGGGGGSNTCFNCG
        GAGGGS GGGGGGGGCFNCGEYGHIARDCQNE+RGS GGGGGRF  GGGGGGGSNTCFNCG
Subjt:  GAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGS-GGGGGRF--GGGGGGGSNTCFNCG

A0A1S3BKK1 cold shock domain-containing protein 39.1e-12794.64Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-----GGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF     GGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-----GGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR--GGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR  GGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGGG G GACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR--GGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        NRGGAGGGS  GGGGGGGCFNCGEYGHIARDCQNE+RGSGGGGGRFGGGGGGGSNTCFNCG
Subjt:  NRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

A0A5D3CJR2 Cold shock domain-containing protein 39.1e-12794.64Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-----GGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF     GGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-----GGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR--GGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR  GGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGGG G GACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR--GGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        NRGGAGGGS  GGGGGGGCFNCGEYGHIARDCQNE+RGSGGGGGRFGGGGGGGSNTCFNCG
Subjt:  NRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

A0A6J1E5N5 cold shock domain-containing protein 3-like2.4e-11992.13Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGG  G  GGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYG

Query:  FGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNRGGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGGG G GACYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        GS   GGGGGGCFNCGEYGH+ARDCQNE+RGS  GGGRF   GGGG+NTCFNCG
Subjt:  GSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

E5RDD6 Cold-shock DNA-binding family protein9.1e-12794.64Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-----GGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF     GGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-----GGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR--GGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR  GGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGGG G GACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR--GGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        NRGGAGGGS  GGGGGGGCFNCGEYGHIARDCQNE+RGSGGGGGRFGGGGGGGSNTCFNCG
Subjt:  NRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 12.7e-4348.75Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGY-----
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G   RGGGG G Y     
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGY-----

Query:  -------GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSN---RGG-GGGGGGCFTCGELGHLARDCPRGNSGGG---GGGGGGAGACYNCGG
               G GG  GG  R      GG GCY CG+ GH ARDCT   N   RG   GG  GC+TCG++GH+ARDC + + G G   G   GG   CY CG 
Subjt:  -------GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSN---RGG-GGGGGGCFTCGELGHLARDCPRGNSGGG---GGGGGGAGACYNCGG

Query:  FGHLARDCNRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSG-----GGGGRF-------GGGGGGGSNTCFNCG
         GH ARDC +  A G    GGGG G C++CG  GHIARDC  + + S      GG G         G GGGG  N C+ CG
Subjt:  FGHLARDCNRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSG-----GGGGRF-------GGGGGGGSNTCFNCG

P27484 Glycine-rich protein 29.9e-3850.62Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGRGGRG-GG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++  G R    GGGGRGG G GG
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGRGGRG-GG

Query:  GGGGYGFGGWRGGDR--RNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARD
        G GGYG GG RGG R    G+ G GGGG Y  G            S  GGGGGG G                G  G GGGG GG   C+ CG  GH ARD
Subjt:  GGGGYGFGGWRGGDR--RNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARD

Query:  CNRGGAGG-----GSGGGGGGGGGCFNCGEYGHIARDCQNENR
        C++ G GG     G GGGGGGGGGC+ CGE GH AR+C +  R
Subjt:  CNRGGAGG-----GSGGGGGGGGGCFNCGEYGHIARDCQNENR

Q38896 Cold shock domain-containing protein 45.8e-3048.21Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGRGGRGGGGGGGYGF
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN   + GGG  GGRGG GGGG G 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGRGGRGGGGGGGYGF

Query:  GGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGGG
        GG RGG    G  G  G G                   RGGGGG   CF CGE GH+AR+C +G  G  GGGGGG                  R G+GGG
Subjt:  GGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGGG

Query:  SGGGGGGGGGCFNCGEYGHIARDC
         GGGGGGG  C++CGE GH ARDC
Subjt:  SGGGGGGGGGCFNCGEYGHIARDC

Q41188 Cold shock protein 22.7e-3549.56Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYGFGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+    + N GGG  GGRG       GFGG
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYGFGG

Query:  WRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSG-GGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGS
         RGG R +G    GGGG Y  G +G            GGG GG  C+ CGE GH+ARDC  G  G GGGGGG G G  Y  GG          GG GGG 
Subjt:  WRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSG-GGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGGGCFNCGEYGHIARDCQNENR
         GGGGGGG C++CGE GH ARDC +  R
Subjt:  GGGGGGGGGCFNCGEYGHIARDCQNENR

Q94C69 Cold shock domain-containing protein 36.2e-4851.36Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRG-----GRGG------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G  G     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRG-----GRGG------

Query:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGG-GCFTCGELGHLARDCPRGNSGG---GGGGGGGAG--ACYNCG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC +    N GGGGGGG  C++CGE+GHLA+DC RG SGG   GGGGG G+G   CY CG
Subjt:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGG-GCFTCGELGHLARDCPRGNSGG---GGGGGGGAG--ACYNCG

Query:  GFGHLARDCNRGGAG--GGSG----------------------GGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        G GH ARDC + G G  GG G                      GGGGGG  C+ CG  GH+ARDC  + RGSG        GGGGGSN CF CG
Subjt:  GFGHLARDCNRGGAG--GGSG----------------------GGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 34.4e-4951.36Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRG-----GRGG------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G  G     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRG-----GRGG------

Query:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGG-GCFTCGELGHLARDCPRGNSGG---GGGGGGGAG--ACYNCG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC +    N GGGGGGG  C++CGE+GHLA+DC RG SGG   GGGGG G+G   CY CG
Subjt:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGG-GCFTCGELGHLARDCPRGNSGG---GGGGGGGAG--ACYNCG

Query:  GFGHLARDCNRGGAG--GGSG----------------------GGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG
        G GH ARDC + G G  GG G                      GGGGGG  C+ CG  GH+ARDC  + RGSG        GGGGGSN CF CG
Subjt:  GFGHLARDCNRGGAG--GGSG----------------------GGGGGGGGCFNCGEYGHIARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCG

AT2G21060.1 glycine-rich protein 2B4.1e-3148.21Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGRGGRGGGGGGGYGF
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN   + GGG  GGRGG GGGG G 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGRGGRGGGGGGGYGF

Query:  GGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGGG
        GG RGG    G  G  G G                   RGGGGG   CF CGE GH+AR+C +G  G  GGGGGG                  R G+GGG
Subjt:  GGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGGG

Query:  SGGGGGGGGGCFNCGEYGHIARDC
         GGGGGGG  C++CGE GH ARDC
Subjt:  SGGGGGGGGGCFNCGEYGHIARDC

AT4G36020.1 cold shock domain protein 11.9e-4448.75Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGY-----
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G   RGGGG G Y     
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGY-----

Query:  -------GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSN---RGG-GGGGGGCFTCGELGHLARDCPRGNSGGG---GGGGGGAGACYNCGG
               G GG  GG  R      GG GCY CG+ GH ARDCT   N   RG   GG  GC+TCG++GH+ARDC + + G G   G   GG   CY CG 
Subjt:  -------GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSN---RGG-GGGGGGCFTCGELGHLARDCPRGNSGGG---GGGGGGAGACYNCGG

Query:  FGHLARDCNRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSG-----GGGGRF-------GGGGGGGSNTCFNCG
         GH ARDC +  A G    GGGG G C++CG  GHIARDC  + + S      GG G         G GGGG  N C+ CG
Subjt:  FGHLARDCNRGGAGGGSGGGGGGGGGCFNCGEYGHIARDCQNENRGSG-----GGGGRF-------GGGGGGGSNTCFNCG

AT4G38680.1 glycine rich protein 21.9e-3649.56Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYGFGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+    + N GGG  GGRG       GFGG
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYGFGG

Query:  WRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSG-GGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGS
         RGG R +G    GGGG Y  G +G            GGG GG  C+ CGE GH+ARDC  G  G GGGGGG G G  Y  GG          GG GGG 
Subjt:  WRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSG-GGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGGGCFNCGEYGHIARDCQNENR
         GGGGGGG C++CGE GH ARDC +  R
Subjt:  GGGGGGGGGCFNCGEYGHIARDCQNENR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAATGATTCCAAAGGCTTCGGCTTCATCAAGCCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCTTC
CATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAATCAAAAGCCATTGAGGTTGTTGCGCTTGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGG
AATGGGAACAGTGGAGCTGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGAGGTGG
TGGGTGTTTTACTTGCGGTGAACTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGCGGAGGTGGAGGTGGAGGCGGCGGTGCTGGGGCTTGCTATAATTGTG
GTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGTGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTGGTTGTTTTAATTGTGGGGAATATGGGCAT
ATAGCCAGAGATTGCCAGAATGAAAACCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGAAATCGGGA
CATTTTGCTAGGGAGTGTCCTGATGCATCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAA
mRNA sequenceShow/hide mRNA sequence
TTTTGGAAAGGGGTAGATCTCATTCTCTTTTCAGCTTCTATATATTGTGAAACCCTTTAGATATTTTGTTCTCGTCGCCATTTTTTGCTCAGAAATTTCTTTTCAAACTT
ACTTGTGAAGATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAATGATTCCAAAGGCTTCGGCTTCATCAAGCCAGATGTAGAAGGTCCGGATCTGTTTGTTC
ATCAATCTTCCATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAATCAAAAGCCATTGAGGTTGTT
GCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGG
TGATAGGCGGAATGGGAACAGTGGAGCTGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTACTCGTCCTAGTAACCGCGGCGGTGGCG
GCGGAGGTGGTGGGTGTTTTACTTGCGGTGAACTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGCGGAGGTGGAGGTGGAGGCGGCGGTGCTGGGGCTTGC
TATAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGTGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTGGTTGTTTTAATTGTGGGGA
ATATGGGCATATAGCCAGAGATTGCCAGAATGAAAACCGTGGCAGCGGCGGTGGTGGCGGAAGATTTGGTGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTG
GAAATCGGGACATTTTGCTAGGGAGTGTCCTGATGCATCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAATTATGT
TCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTTACTTGAGAGGTTTTTATTAATTTTGATATTCCATGGTTGTTTAGCTCTTTAGGGGCAAATTTTTCTGGTTCAC
ACATGATGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTGTTCTTGTTTTGTTACCTTTTTATATCTCGAGTTCATGTTGTGCGATGTCTGATTCAATTGTAATTA
TCCATGTTAACATTTAATAGCACATGGAATGCAGTAGCTAAGTTTGATTTGATGTTACACGTTGTTTCTTGTTGGCAAGTTCTTTGTTAGAGCAATACCGTACTAGGCTA
TCGTTTT
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGYGFGGWRGGDRR
NGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGCFTCGELGHLARDCPRGNSGGGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGEYGH
IARDCQNENRGSGGGGGRFGGGGGGGSNTCFNCGNRDILLGSVLMHLDKEGERVIVYNFSFNLNIVL