CuGenDBv2

Gene ID	PI0026645
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr11:14916645..14921628
RNA-Seq Expression	PI0026645
Synteny	PI0026645
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031662.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-61

69.31

Show/hide

Query:  MSSFPVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTALRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL
        MSSFP +NASQ+VRDAYDRWTKAND   +YILA+MSD+L+KKHE M+   + EAIKYVYNARMKEGQSVREHVL+ +V FNVA+ NGAV DE++QVS+IL
Subjt:  MSSFPVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTALRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHSKRFQKGLSSGTKSAPSSSRTKKIQKKKGGKGKVPAVAAKGKGKAKDLN
        +SL KSFLQFRSN  MNKIEYNMTTLL ELQ FQSLM+   QKE EAN  +S+RF          APSSS +KKIQK KGGKGK P VAA+GKGK K   
Subjt:  ESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHSKRFQKGLSSGTKSAPSSSRTKKIQKKKGGKGKVPAVAAKGKGKAKDLN

Query:  KG
        KG
Subjt:  KG

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

66.04

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Query:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        P  NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHESM+TA                 ++H+A+KY+YNARM EG SVREHVL+MMV FNVAE NG
Subjt:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

Query:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV
        AVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y +TTLLNELQTF+SLMK KGQK  EANVA S ++F +G +SGTKS PSSS  KK +KKKGG+G K 
Subjt:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV

Query:  PAVAAKGKGKAK
           AAK   KAK
Subjt:  PAVAAKGKGKAK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

66.04

Show/hide

Query:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        P  NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHESM+TA                 ++H+A+KY+YNARM EG SVREHVL+MMV FNVAE NG
Subjt:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

Query:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV
        AVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y +TTLLNELQTF+SLMK KGQK  EANVA S ++F +G +SGTKS PSSS  KK +KKKGG+G K 
Subjt:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV

Query:  PAVAAKGKGKAK
           AAK   KAK
Subjt:  PAVAAKGKGKAK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

66.04

Show/hide

Query:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        P  NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHESM+TA                 ++H+A+KY+YNARM EG SVREHVL+MMV FNVAE NG
Subjt:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

Query:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV
        AVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y +TTLLNELQTF+SLMK KGQK  EANVA S ++F +G +SGTKS PSSS  KK +KKKGG+G K 
Subjt:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV

Query:  PAVAAKGKGKAK
           AAK   KAK
Subjt:  PAVAAKGKGKAK

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

66.04

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Query:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        P  NA+QTVR+ Y+RW KAN+KAR YILAS+S+VL KKHESM+TA                 ++H+A+KY+YNARM EG SVREHVL++MV FNVAE NG
Subjt:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

Query:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV
        AVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y +TTLLNELQTF+SLMK KGQK  EANVA S ++F +G +SGTKS PSSS  KK +KKKGG+G K 
Subjt:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV

Query:  PAVAAKGKGKAK
           AAK   KAK
Subjt:  PAVAAKGKGKAK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKQ7 Gag/pol protein

1.5e-61

69.31

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Query:  MSSFPVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTALRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL
        MSSFP +NASQ+VRDAYDRWTKAND   +YILA+MSD+L+KKHE M+   + EAIKYVYNARMKEGQSVREHVL+ +V FNVA+ NGAV DE++QVS+IL
Subjt:  MSSFPVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTALRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL

Query:  ESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHSKRFQKGLSSGTKSAPSSSRTKKIQKKKGGKGKVPAVAAKGKGKAKDLN
        +SL KSFLQFRSN  MNKIEYNMTTLL ELQ FQSLM+   QKE EAN  +S+RF          APSSS +KKIQK KGGKGK P VAA+GKGK K   
Subjt:  ESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHSKRFQKGLSSGTKSAPSSSRTKKIQKKKGGKGKVPAVAAKGKGKAKDLN

Query:  KG
        KG
Subjt:  KG

A0A5A7SMH8 Gag/pol protein

5.2e-59

66.04

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Query:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        P  NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHESM+TA                 ++H+A+KY+YNARM EG SVREHVL+MMV FNVAE NG
Subjt:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

Query:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV
        AVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y +TTLLNELQTF+SLMK KGQK  EANVA S ++F +G +SGTKS PSSS  KK +KKKGG+G K 
Subjt:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV

Query:  PAVAAKGKGKAK
           AAK   KAK
Subjt:  PAVAAKGKGKAK

A0A5A7TU93 Gag/pol protein

5.2e-59

66.04

Show/hide

Query:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        P  NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHESM+TA                 ++H+A+KY+YNARM EG SVREHVL+MMV FNVAE NG
Subjt:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

Query:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV
        AVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y +TTLLNELQTF+SLMK KGQK  EANVA S ++F +G +SGTKS PSSS  KK +KKKGG+G K 
Subjt:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV

Query:  PAVAAKGKGKAK
           AAK   KAK
Subjt:  PAVAAKGKGKAK

A0A5A7TWB9 Gag/pol protein

5.2e-59

66.04

Show/hide

Query:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        P  NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHESM+TA                 ++H+A+KY+YNARM EG SVREHVL+MMV FNVAE NG
Subjt:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

Query:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV
        AVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y +TTLLNELQTF+SLMK KGQK  EANVA S ++F +G +SGTKS PSSS  KK +KKKGG+G K 
Subjt:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV

Query:  PAVAAKGKGKAK
           AAK   KAK
Subjt:  PAVAAKGKGKAK

A0A5A7V4M1 Gag/pol protein

5.2e-59

66.04

Show/hide

Query:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        P  NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHESM+TA                 ++H+A+KY+YNARM EG SVREHVL+MMV FNVAE NG
Subjt:  PVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTA-----------------LRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

Query:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV
        AVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y +TTLLNELQTF+SLMK KGQK  EANVA S ++F +G +SGTKS PSSS  KK +KKKGG+G K 
Subjt:  AVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHS-KRFQKGLSSGTKSAPSSSRTKKIQKKKGGKG-KV

Query:  PAVAAKGKGKAK
           AAK   KAK
Subjt:  PAVAAKGKGKAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCCTCCTTCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGACAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGA
CGTACTGACCAAGAAACATGAGTCCATGGTCACTGCACTCCGACACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTC
TCGACATGATGGTCCAATTCAATGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTC
CGTAGCAATGCGGTTATGAACAAGATAGAGTATAACATGACTACCCTCCTTAACGAATTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAAGAGAGGC
AAATGTTGCCCATTCCAAGAGGTTTCAAAAGGGTTTATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTAGGACTAAAAAAATCCAGAAGAAGAAAGGAGGAAAGGGGA
AAGTTCCTGCTGTTGCTGCTAAGGGCAAGGGAAAGGCTAAGGACTTGAACAAAGGGCCCTACCCTCTCTATGGCACGAGAGGGGTTTTTCTGTTTATTGGTTGGACCACA
AACATGTTGTTCATTAGAGGAGCACTGAAATATATCTACAGTGAGAAGAGTTCAGCTGTGAGTCTTTAG

mRNA sequence

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Protein sequence

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MSSFPVRNASQTVRDAYDRWTKANDKARVYILASMSDVLTKKHESMVTALRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQF
RSNAVMNKIEYNMTTLLNELQTFQSLMKNKGQKEREANVAHSKRFQKGLSSGTKSAPSSSRTKKIQKKKGGKGKVPAVAAKGKGKAKDLNKGPYPLYGTRGVFLFIGWTT
NMLFIRGALKYIYSEKSSAVSL

PI0026645 (gene) of Melon (PI 482460) v1 genome