CuGenDBv2

Gene ID	PI0026654
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Genome location	chr01:2196519..2197648
RNA-Seq Expression	PI0026654
Synteny	PI0026654
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0003713 - transcription coactivator activity (molecular function) GO:0031490 - chromatin DNA binding (molecular function)
InterPro domains	IPR036546 - Mediator complex subunit 15, KIX domain IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571702.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-31

68.81

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MDTNNW PTQGGEPG+EAGDWRSQLQPDSR RIVNKI+ TLKR  PVSG EGL+ELKK   +            SDYLRKI+LKMLT ETKSQ P+ +SL
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

KAG7011427.1 Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-31

68.81

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MDTNNW PTQGGEPG+EAGDWRSQLQPDSR RIVNKI+ TLKR  PVSG EGL+ELKK   +            SDYLRKI+LKMLT ETKSQ P+ +SL
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

XP_008455247.1 PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo]

9.5e-32

67.89

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MD NNW PTQGGEPGMEAGDWRSQLQPDSRHRIVNKI+ TLKR  PVSGQEGL+EL+K   +            SDYLRKI+LKMLT ETK+QP + + L
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

XP_022963528.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]

1.2e-31

68.81

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MDTNNW PTQGGEPG+EAGDWRSQLQPDSR RIVNKI+ TLKR  PVSG EGL+ELKK   +            SDYLRKI+LKMLT ETKSQ P+ +SL
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

XP_023553730.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]

1.2e-31

68.81

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MDTNNW PTQGGEPG+EAGDWRSQLQPDSR RIVNKI+ TLKR  PVSG EGL+ELKK   +            SDYLRKI+LKMLT ETKSQ P+ +SL
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C0H1 mediator of RNA polymerase II transcription subunit 15a

4.6e-32

67.89

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MD NNW PTQGGEPGMEAGDWRSQLQPDSRHRIVNKI+ TLKR  PVSGQEGL+EL+K   +            SDYLRKI+LKMLT ETK+QP + + L
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

A0A2P6QLK2 Putative coactivator CBP, KIX domain-containing protein

7.6e-27

61.4

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MDTNNW P QGGEP M+AGDWRSQLQ DSR RIVNKI+ TLKR  P SGQEGL+ELKK   +            SDYLRKI+LKMLT ETKSQ  + +SL
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDNNIENP
        PSN     N   +P
Subjt:  PSNPMLTDNNIENP

A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a

4.6e-32

67.89

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MD NNW PTQGGEPGMEAGDWRSQLQPDSRHRIVNKI+ TLKR  PVSGQEGL+EL+K   +            SDYLRKI+LKMLT ETK+QP + + L
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

6.0e-32

68.81

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MDTNNW PTQGGEPG+EAGDWRSQLQPDSR RIVNKI+ TLKR  PVSG EGL+ELKK   +            SDYLRKI+LKMLT ETKSQ P+ +SL
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

3.0e-31

67.89

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Query:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL
        MDTNNW PTQGGEPG+E GDWRSQLQPDSR RIVNKI+ TLKR  PVSG EGL+ELKK   +            SDYLRKI+LKMLT ETKSQ P+ +SL
Subjt:  MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSL

Query:  PSNPMLTDN
        PSNPM+  N
Subjt:  PSNPMLTDN

SwissProt top hits

e value

%identity

Alignment

F4I171 Mediator of RNA polymerase II transcription subunit 15a

6.0e-21

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Query:  MDTNNWIPT-QGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSS
        MD NNW P+   GEP M+ GDWR+QL PDSR +IVNKI+ TLK+  P SG EG+NEL++   +            +DYLRKI++KMLT ETKSQ    SS
Subjt:  MDTNNWIPT-QGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSS

Arabidopsis top hits

e value

%identity

Alignment

AT1G15780.1 unknown protein

4.3e-22

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Query:  MDTNNWIPT-QGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSS
        MD NNW P+   GEP M+ GDWR+QL PDSR +IVNKI+ TLK+  P SG EG+NEL++   +            +DYLRKI++KMLT ETKSQ    SS
Subjt:  MDTNNWIPT-QGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSS

AT1G15790.1 unknown protein

1.4e-09

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Query:  GDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSLPSN---PMLTDNNIENPE
        GDWR+Q    SR RIVNKI+ T  +  P    EG NEL+K   +            ++YLR+I +KML  ETKSQ    SS   +   P++ + ++ N E
Subjt:  GDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSLPSN---PMLTDNNIENPE

AT1G15790.2 unknown protein

1.4e-09

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Query:  GDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSLPSN---PMLTDNNIENPE
        GDWR+Q    SR RIVNKI+ T  +  P    EG NEL+K   +            ++YLR+I +KML  ETKSQ    SS   +   P++ + ++ N E
Subjt:  GDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCK------------SDYLRKIALKMLTKETKSQPPLWSSLPSN---PMLTDNNIENPE

Sequences

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CDS sequence

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ATGGATACCAATAATTGGATACCTACTCAAGGTGGAGAACCTGGAATGGAGGCCGGGGATTGGAGGTCTCAATTGCAGCCAGATTCTCGACATCGAATTGTCAACAAAAT
ACTTGTGACATTGAAGAGGGACTTTCCCGTCTCTGGTCAAGAGGGGTTGAATGAGCTGAAAAAAAATTGCTGTAAGTCAGATTACCTAAGGAAAATAGCTCTGAAAATGC
TAACTAAGGAAACCAAATCTCAGCCTCCTTTATGGAGTTCATTACCGTCCAATCCAATGCTGACTGACAATAATATTGAAAATCCTGAGTTTGAATATTTTAGTGAAGAT
GAAGCATCCACAATAACTTCTTTAGACGATTGA

mRNA sequence

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Protein sequence

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MDTNNWIPTQGGEPGMEAGDWRSQLQPDSRHRIVNKILVTLKRDFPVSGQEGLNELKKNCCKSDYLRKIALKMLTKETKSQPPLWSSLPSNPMLTDNNIENPEFEYFSED
EASTITSLDD

PI0026654 (gene) of Melon (PI 482460) v1 genome