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PI0026733 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026733
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:23136921..23137103
RNA-Seq ExpressionPI0026733
SyntenyPI0026733
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]3.3e-1778.33Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRDTRQ SLGARLIRI Q+G+YNDYVKKF+NYSAPLP MAESVL  AF+ GLEP+L
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

KAA0043867.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-1778.33Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRDT   SLGARLIRI QDG+Y DYVKKF+NYSAPLP MAESVL DAF+IGLEP+L
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

KAA0050223.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1780Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRDT Q SLGARLIRI QDG+YNDYVKKF+NYSAPLP MAESVL DAF+ GLEP+L
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

KAA0067146.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-1780Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRD+ Q SLGARLIRI QDG+YNDYVKKF+ YSAPLP MAESVL+DAFV GLEPSL
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

TYJ98185.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1780Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRDT Q SLGARLIRI QDG+YNDYVKKF+NYSAPLP MAESVL DAF+ GLEP+L
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein1.6e-1778.33Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRDTRQ SLGARLIRI Q+G+YNDYVKKF+NYSAPLP MAESVL  AF+ GLEP+L
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

A0A5A7U2T6 Retrotransposon protein7.2e-1880Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRDT Q SLGARLIRI QDG+YNDYVKKF+NYSAPLP MAESVL DAF+ GLEP+L
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

A0A5D3BC89 Ty3-gypsy retrotransposon protein9.4e-1880Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRD+ Q SLGARLIRI QDG+YNDYVKKF+ YSAPLP MAESVL+DAFV GLEPSL
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

A0A5D3BI69 Retrotransposon protein7.2e-1880Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRDT Q SLGARLIRI QDG+YNDYVKKF+NYSAPLP MAESVL DAF+ GLEP+L
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

A0A5D3DPM2 Retrotransposon protein1.2e-1778.33Show/hide
Query:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL
        MF+ FRDT   SLGARLIRI QDG+Y DYVKKF+NYSAPLP MAESVL DAF+IGLEP+L
Subjt:  MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAACATTTTAGAGATACCAGACAGGGAAGTTTGGGAGCAAGATTAATCAGAATCACTCAAGATGGAACATACAACGATTATGTCAAGAAGTTTCTGAACTACTC
TGCCCCTCTCCCAGATATGGCAGAGAGTGTTCTTATGGATGCTTTTGTAATTGGGTTGGAACCCTCCCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCAACATTTTAGAGATACCAGACAGGGAAGTTTGGGAGCAAGATTAATCAGAATCACTCAAGATGGAACATACAACGATTATGTCAAGAAGTTTCTGAACTACTC
TGCCCCTCTCCCAGATATGGCAGAGAGTGTTCTTATGGATGCTTTTGTAATTGGGTTGGAACCCTCCCTGTAG
Protein sequenceShow/hide protein sequence
MFQHFRDTRQGSLGARLIRITQDGTYNDYVKKFLNYSAPLPDMAESVLMDAFVIGLEPSL