CuGenDBv2

Gene ID	PI0026739
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr10:1164174..1164551
RNA-Seq Expression	PI0026739
Synteny	PI0026739
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR041373 - Reverse transcriptase, RNase H-like domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050676.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-43

78.76

Show/hide

Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF FEHKK+SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA  GKT
Subjt:  VQTVMNLATTGKT

KAA0053507.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-43

78.76

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Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF F+HKK SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA TGKT
Subjt:  VQTVMNLATTGKT

KAA0059106.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-43

78.76

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Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF FEHKK SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA  GKT
Subjt:  VQTVMNLATTGKT

KAA0060055.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-43

78.76

Show/hide

Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF FEHKK SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA  GKT
Subjt:  VQTVMNLATTGKT

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-43

78.76

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Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF FEHKK SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA  GKT
Subjt:  VQTVMNLATTGKT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U921 Reverse transcriptase

5.5e-44

78.76

Show/hide

Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF FEHKK+SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA  GKT
Subjt:  VQTVMNLATTGKT

A0A5A7UG93 Reverse transcriptase

5.5e-44

78.76

Show/hide

Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF F+HKK SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA TGKT
Subjt:  VQTVMNLATTGKT

A0A5A7UY33 Reverse transcriptase

9.3e-44

78.76

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Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF FEHKK SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA  GKT
Subjt:  VQTVMNLATTGKT

A0A5A7V2E6 Reverse transcriptase

9.3e-44

78.76

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Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF FEHKK SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA  GKT
Subjt:  VQTVMNLATTGKT

A0A5D3C4R1 Reverse transcriptase

1.2e-43

78.76

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Query:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS
        +RAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSKQARWQ+FLAEFDF FEHKK SSN+AADALSRK EHAA+C+LAHLQ S+I GS+ + LRE+LQKD +
Subjt:  IRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKDPS

Query:  VQTVMNLATTGKT
         Q VMNLA  GKT
Subjt:  VQTVMNLATTGKT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGTTCTTGGTTGGAAGACCGGGTCATACAAGGATAAGGGCCTGGAGACAATATCTGTTGGGTTCTGCATTCGTTGTAAAAACAGATAACAGTGCTACTTGCCACTT
CTTTAGTCAGCCAAAATTGACTTCGAAGCAGGCAAGGTGGCAGGATTTTCTAGCAGAGTTTGACTTCAATTTCGAGCACAAGAAGAGATCGAGTAATCGAGCAGCAGATG
CCCTAAGTCGAAAGAGCGAACATGCGGCTCTATGCATGTTAGCTCATCTCCAGACAAGTAAGATTGATGGGTCGATGCACAACGCCTTACGAGAATACCTTCAGAAAGAT
CCCTCTGTCCAAACTGTCATGAACTTAGCGACGACTGGTAAGACCTGA

mRNA sequence

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Protein sequence

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MKFLVGRPGHTRIRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSKQARWQDFLAEFDFNFEHKKRSSNRAADALSRKSEHAALCMLAHLQTSKIDGSMHNALREYLQKD
PSVQTVMNLATTGKT

PI0026739 (gene) of Melon (PI 482460) v1 genome