CuGenDBv2

Gene ID	PI0026753
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr07:15993432..15996806
RNA-Seq Expression	PI0026753
Synteny	PI0026753
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-73

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-73

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-73

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-73

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA QTVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL++MV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-73

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

6.9e-74

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

A0A5A7TU93 Gag/pol protein

6.9e-74

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

A0A5A7TWB9 Gag/pol protein

6.9e-74

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

A0A5A7V6N0 Gag/pol protein

6.9e-74

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA QTVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL++MV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

A0A5D3CPJ6 Gag/pol protein

6.9e-74

72.56

Show/hide

Query:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV
        +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V
Subjt:  ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFV

Query:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS
        +EHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS  S
Subjt:  KEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSASS

Query:  FSRTKKIQKKKGGKG
         S  KK +KKKGG+G
Subjt:  FSRTKKIQKKKGGKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTCTTGTAATCAATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCTTTGTTCGAAATGCACCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAA
GGCCAATGAAAAGGTCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTAAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGA
TGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCATATGAAGGAAGACCAATTTGTTAAAGAACATGTTCTCGACATGATGGTC
CAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGT
TATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATT
CCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCATCTTCATTTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGAAATGACACA
AAGCCCCTCTAA

mRNA sequence

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Protein sequence

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MILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMV
QFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSASSFSRTKKIQKKKGGKGKGNDT
KPL

PI0026753 (gene) of Melon (PI 482460) v1 genome