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PI0026809 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026809
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:19848144..19850243
RNA-Seq ExpressionPI0026809
SyntenyPI0026809
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059553.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.6e-1765.28Show/hide
Query:  NLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN
        +L IVLKQERKLYVLDEAL D+EP  G TK Q+  Y+KHY DCIDVTCLMLACMN  L KQF+ M + ++++
Subjt:  NLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN

KAG8501203.1 hypothetical protein CXB51_003328 [Gossypium anomalum]5.6e-1653.47Show/hide
Query:  NTNSAIPSMSRGFILEKDKMTGTNFFD--INLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSL
        NTN    + S   ILEKDK+ G NF D   NLRIVLKQERKLYV+++ LPD EP A A++  + AY KH ++ +DV CLMLA MNL LQKQ + M +  +
Subjt:  NTNSAIPSMSRGFILEKDKMTGTNFFD--INLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSL

Query:  V
        +
Subjt:  V

TYK01069.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-1675.86Show/hide
Query:  QERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWM
        ++RKLYVLDEALPD+EP+AGATK Q+ AYSKHY++CIDVTCLMLAC N  LQKQF+ M
Subjt:  QERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWM

TYK29971.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.6e-1765.28Show/hide
Query:  NLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN
        +L IVLKQERKLYVLDEAL D+EP  G TK Q+  Y+KHY DCIDVTCLMLACMN  L KQF+ M + ++++
Subjt:  NLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN

XP_017640149.1 PREDICTED: uncharacterized protein LOC108481542 [Gossypium arboreum]1.5e-1652.48Show/hide
Query:  NTNSAIPSMSRGFILEKDKMTGTNFFD--INLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSL
        NTN    ++S G +LEK+K+TG NF D   NLRIVLKQERKLYV++++LPD EP   A++  + AY KH +D +DV CLMLA MN  LQKQ + M +  +
Subjt:  NTNSAIPSMSRGFILEKDKMTGTNFFD--INLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSL

Query:  V
        +
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7UUH7 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-1765.28Show/hide
Query:  NLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN
        +L IVLKQERKLYVLDEAL D+EP  G TK Q+  Y+KHY DCIDVTCLMLACMN  L KQF+ M + ++++
Subjt:  NLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN

A0A5D3BSK1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-1675.86Show/hide
Query:  QERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWM
        ++RKLYVLDEALPD+EP+AGATK Q+ AYSKHY++CIDVTCLMLAC N  LQKQF+ M
Subjt:  QERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWM

A0A5D3E303 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-1765.28Show/hide
Query:  NLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN
        +L IVLKQERKLYVLDEAL D+EP  G TK Q+  Y+KHY DCIDVTCLMLACMN  L KQF+ M + ++++
Subjt:  NLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN

A0A6P4NC90 uncharacterized protein LOC1084661684.6e-1650.98Show/hide
Query:  TNTNSAIPSMSRGFILEKDKMTGTNFFD--INLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQS
        TNTN    ++S   +LEKDK+ G NF D   NLRI LKQERKLYV++++LPD EP   A+K  + AY KH +D +D+ CLMLA MN  LQKQ + M +  
Subjt:  TNTNSAIPSMSRGFILEKDKMTGTNFFD--INLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQS

Query:  LV
        ++
Subjt:  LV

A0A6P4NLK4 uncharacterized protein LOC1084815427.1e-1752.48Show/hide
Query:  NTNSAIPSMSRGFILEKDKMTGTNFFD--INLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSL
        NTN    ++S G +LEK+K+TG NF D   NLRIVLKQERKLYV++++LPD EP   A++  + AY KH +D +DV CLMLA MN  LQKQ + M +  +
Subjt:  NTNSAIPSMSRGFILEKDKMTGTNFFD--INLRIVLKQERKLYVLDEALPDQEPKAGATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSL

Query:  V
        +
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCCCGGGACCCCTTCTTACCGATCCCAAGACTAACTCCTGATAAGCTGATTGGGCCAGAAGATTTTTTGGTGATACGAATTGGAGGATTGTTCTTACCAAGAAC
AGAGGCAATTCGAACTTTGAAAGTTACACACATCGACACAGAGAATATTATGACAAATACTAATTCTGCAATACCTAGCATGTCCAGGGGATTTATCCTTGAGAAGGATA
AAATGACGGGGACTAACTTCTTTGACATCAATTTGAGGATTGTCCTTAAGCAAGAAAGGAAGTTGTATGTCCTAGATGAGGCTCTTCCTGATCAGGAACCTAAGGCAGGA
GCGACTAAGAATCAGAGGCATGCTTATAGTAAGCATTACAATGATTGCATTGATGTCACTTGTCTCATGCTTGCATGCATGAACTTAGCGCTTCAGAAGCAGTTCAAATG
GATGCCTTCACAATCATTGGTCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCCCGGGACCCCTTCTTACCGATCCCAAGACTAACTCCTGATAAGCTGATTGGGCCAGAAGATTTTTTGGTGATACGAATTGGAGGATTGTTCTTACCAAGAAC
AGAGGCAATTCGAACTTTGAAAGTTACACACATCGACACAGAGAATATTATGACAAATACTAATTCTGCAATACCTAGCATGTCCAGGGGATTTATCCTTGAGAAGGATA
AAATGACGGGGACTAACTTCTTTGACATCAATTTGAGGATTGTCCTTAAGCAAGAAAGGAAGTTGTATGTCCTAGATGAGGCTCTTCCTGATCAGGAACCTAAGGCAGGA
GCGACTAAGAATCAGAGGCATGCTTATAGTAAGCATTACAATGATTGCATTGATGTCACTTGTCTCATGCTTGCATGCATGAACTTAGCGCTTCAGAAGCAGTTCAAATG
GATGCCTTCACAATCATTGGTCAACTGA
Protein sequenceShow/hide protein sequence
MLSRDPFLPIPRLTPDKLIGPEDFLVIRIGGLFLPRTEAIRTLKVTHIDTENIMTNTNSAIPSMSRGFILEKDKMTGTNFFDINLRIVLKQERKLYVLDEALPDQEPKAG
ATKNQRHAYSKHYNDCIDVTCLMLACMNLALQKQFKWMPSQSLVN