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PI0026836 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026836
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr04:12045918..12047200
RNA-Seq ExpressionPI0026836
SyntenyPI0026836
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036767.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]2.3e-5452.87Show/hide
Query:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------
        + R R  A G    QFD+DVT+EYI+WY+NI++LYIT+PGA    +RSNN RLR+VADDPQQV +I N+NE YMENIHYMYDVPIVPAPVQRRR      
Subjt:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------

Query:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA
                                                   VGQSSDFG GYYNS+A  SS++F Q Y+DLG++PSSSYMHGHG GRG+HN+YLYYE 
Subjt:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA

Query:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR
        PAAVPE                 DEQQQQEN E ++QQRVQ RR
Subjt:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR

KAA0067080.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]8.5e-5754.92Show/hide
Query:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGAV----RSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------
        + R R  A G    QFD+DVT+EYINWY+NI++LYIT+PGAV    RSNN RLR+VADDPQQV +I N+NE YMENIHYMYDVPIVPAPVQRRR      
Subjt:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGAV----RSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------

Query:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA
                                                   VGQSSDFG GYYNSEA  SS++F Q Y+DLG++PSSSYMHGHG GRGEHN+YLYYE 
Subjt:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA

Query:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR
        PAAVPE                 DEQQQQENQE ++QQRVQ RR
Subjt:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR

TYK14590.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.3e-5447.35Show/hide
Query:  VSQYRYMFDLLQPDQF---------------------------------VEFLYERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VR
        VSQYRYMFDLLQP QF                                 V   + R R  A G    QFD+DVT+EYI+WY+NI++LYIT+PGA    +R
Subjt:  VSQYRYMFDLLQPDQF---------------------------------VEFLYERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VR

Query:  SNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR---------------------------------------------------VG
        SNN RLR+VADD QQV +I N+NE YMENIHYMYDVPIV APVQ+RR                                                   VG
Subjt:  SNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR---------------------------------------------------VG

Query:  QSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAPA------------------AVPEHPDEQQQQENQEGLEQQRVQG
        QSSDF  GYYNSEA  SS+NF Q Y+DLG++PSSSYMH HG GRGEHN+YLYYE PA                  AVPE  DEQQQQ+NQE ++QQRVQ 
Subjt:  QSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAPA------------------AVPEHPDEQQQQENQEGLEQQRVQG

Query:  RR
        RR
Subjt:  RR

TYK27427.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]3.6e-5545.14Show/hide
Query:  VSQYRYMFDLLQPDQFVEFL-----------------------------------------------------YERSRHIADGSSFGQFDVDVTREYINW
        VSQYRYMFDLLQP Q +  L                                                     + R R  A G    QFD+DVT+EYI+W
Subjt:  VSQYRYMFDLLQPDQFVEFL-----------------------------------------------------YERSRHIADGSSFGQFDVDVTREYINW

Query:  YRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR---------------------------------
        Y+NI++LYIT+PGA    +RSNN+RLR++ADDPQQV +I N+NE YMENIHYMYDVPIVPAPVQRRR                                 
Subjt:  YRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR---------------------------------

Query:  ------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAP---------------AAVPEHPDE
                          VGQSSDFG GYYNSEA  SS++F Q Y+DLG++PSSSYMHGHG GRGEHN+YLYY+ P               AAVPE  DE
Subjt:  ------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAP---------------AAVPEHPDE

Query:  QQQQENQEGLEQQRVQGRR
        QQQQEN E ++QQRVQ RR
Subjt:  QQQQENQEGLEQQRVQGRR

XP_008449513.1 PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo]2.3e-5452.44Show/hide
Query:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------
        + R R  A G    QFD+DVT+EYI+WY+NI++LYIT+PGA    +RSNN+RLR++ADDPQQV +I N+NE YMENIHYMYDVPIVPAPVQRRR      
Subjt:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------

Query:  ---------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYY
                                                     VGQSSDFG GYYNSEA  SS++F Q Y+DLG++PSSSYMHGHG GRGEHN+YLYY
Subjt:  ---------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYY

Query:  EAP---------------AAVPEHPDEQQQQENQEGLEQQRVQGRR
        + P               AAVPE  DEQQQQEN E ++QQRVQ RR
Subjt:  EAP---------------AAVPEHPDEQQQQENQEGLEQQRVQGRR

TrEMBL top hitse value%identityAlignment
A0A5A7T598 Serine/threonine-protein phosphatase 7 long form-like protein1.1e-5452.87Show/hide
Query:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------
        + R R  A G    QFD+DVT+EYI+WY+NI++LYIT+PGA    +RSNN RLR+VADDPQQV +I N+NE YMENIHYMYDVPIVPAPVQRRR      
Subjt:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------

Query:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA
                                                   VGQSSDFG GYYNS+A  SS++F Q Y+DLG++PSSSYMHGHG GRG+HN+YLYYE 
Subjt:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA

Query:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR
        PAAVPE                 DEQQQQEN E ++QQRVQ RR
Subjt:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X14.1e-5754.92Show/hide
Query:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGAV----RSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------
        + R R  A G    QFD+DVT+EYINWY+NI++LYIT+PGAV    RSNN RLR+VADDPQQV +I N+NE YMENIHYMYDVPIVPAPVQRRR      
Subjt:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGAV----RSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------

Query:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA
                                                   VGQSSDFG GYYNSEA  SS++F Q Y+DLG++PSSSYMHGHG GRGEHN+YLYYE 
Subjt:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA

Query:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR
        PAAVPE                 DEQQQQENQE ++QQRVQ RR
Subjt:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein1.1e-5452.87Show/hide
Query:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------
        + R R  A G    QFD+DVT+EYI+WY+NI++LYIT+PGA    +RSNN RLR+VADDPQQV +I N+NE YMENIHYMYDVPIVPAPVQRRR      
Subjt:  YERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR------

Query:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA
                                                   VGQSSDFG GYYNS+A  SS++F Q Y+DLG++PSSSYMHGHG GRG+HN+YLYYE 
Subjt:  -------------------------------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEA

Query:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR
        PAAVPE                 DEQQQQEN E ++QQRVQ RR
Subjt:  PAAVPE---------------HPDEQQQQENQEGLEQQRVQGRR

A0A5D3CT32 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.1e-5447.35Show/hide
Query:  VSQYRYMFDLLQPDQF---------------------------------VEFLYERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VR
        VSQYRYMFDLLQP QF                                 V   + R R  A G    QFD+DVT+EYI+WY+NI++LYIT+PGA    +R
Subjt:  VSQYRYMFDLLQPDQF---------------------------------VEFLYERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGA----VR

Query:  SNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR---------------------------------------------------VG
        SNN RLR+VADD QQV +I N+NE YMENIHYMYDVPIV APVQ+RR                                                   VG
Subjt:  SNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR---------------------------------------------------VG

Query:  QSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAPA------------------AVPEHPDEQQQQENQEGLEQQRVQG
        QSSDF  GYYNSEA  SS+NF Q Y+DLG++PSSSYMH HG GRGEHN+YLYYE PA                  AVPE  DEQQQQ+NQE ++QQRVQ 
Subjt:  QSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAPA------------------AVPEHPDEQQQQENQEGLEQQRVQG

Query:  RR
        RR
Subjt:  RR

A0A5D3DUI1 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.7e-5545.14Show/hide
Query:  VSQYRYMFDLLQPDQFVEFL-----------------------------------------------------YERSRHIADGSSFGQFDVDVTREYINW
        VSQYRYMFDLLQP Q +  L                                                     + R R  A G    QFD+DVT+EYI+W
Subjt:  VSQYRYMFDLLQPDQFVEFL-----------------------------------------------------YERSRHIADGSSFGQFDVDVTREYINW

Query:  YRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR---------------------------------
        Y+NI++LYIT+PGA    +RSNN+RLR++ADDPQQV +I N+NE YMENIHYMYDVPIVPAPVQRRR                                 
Subjt:  YRNITRLYITRPGA----VRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVPAPVQRRR---------------------------------

Query:  ------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAP---------------AAVPEHPDE
                          VGQSSDFG GYYNSEA  SS++F Q Y+DLG++PSSSYMHGHG GRGEHN+YLYY+ P               AAVPE  DE
Subjt:  ------------------VGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAP---------------AAVPEHPDE

Query:  QQQQENQEGLEQQRVQGRR
        QQQQEN E ++QQRVQ RR
Subjt:  QQQQENQEGLEQQRVQGRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGAGCTTATGGTTCAAGTCTCTCAGTATAGGTACATGTTTGATCTTCTTCAACCTGATCAGTTTGTCGAATTTCTGTACGAACGGTCACGACATATAGCAGACGG
ATCTTCGTTTGGGCAATTTGATGTTGATGTAACTCGAGAATACATCAATTGGTACAGAAATATTACCAGGCTCTATATCACTCGGCCGGGAGCTGTTAGGTCGAACAATA
GTAGACTTCGGGATGTTGCAGATGATCCACAACAGGTCCAAGATATATACAACAATAACGAGTGGTACATGGAGAACATACACTATATGTACGATGTACCTATTGTACCT
GCACCAGTTCAAAGGAGACGAGTTGGTCAATCGTCAGACTTCGGGACAGGATATTATAATTCAGAGGCAAATCCATCATCGTCAAACTTTGAACAAGGATACCACGATTT
AGGGACCAATCCATCATCTTCATACATGCATGGACATGGGTGTGGTCGTGGAGAACATAACAAATATTTGTACTACGAAGCGCCTGCAGCGGTACCCGAGCACCCAGATG
AGCAACAACAACAAGAGAATCAGGAAGGACTAGAGCAACAAAGAGTGCAGGGTCGACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGAGCTTATGGTTCAAGTCTCTCAGTATAGGTACATGTTTGATCTTCTTCAACCTGATCAGTTTGTCGAATTTCTGTACGAACGGTCACGACATATAGCAGACGG
ATCTTCGTTTGGGCAATTTGATGTTGATGTAACTCGAGAATACATCAATTGGTACAGAAATATTACCAGGCTCTATATCACTCGGCCGGGAGCTGTTAGGTCGAACAATA
GTAGACTTCGGGATGTTGCAGATGATCCACAACAGGTCCAAGATATATACAACAATAACGAGTGGTACATGGAGAACATACACTATATGTACGATGTACCTATTGTACCT
GCACCAGTTCAAAGGAGACGAGTTGGTCAATCGTCAGACTTCGGGACAGGATATTATAATTCAGAGGCAAATCCATCATCGTCAAACTTTGAACAAGGATACCACGATTT
AGGGACCAATCCATCATCTTCATACATGCATGGACATGGGTGTGGTCGTGGAGAACATAACAAATATTTGTACTACGAAGCGCCTGCAGCGGTACCCGAGCACCCAGATG
AGCAACAACAACAAGAGAATCAGGAAGGACTAGAGCAACAAAGAGTGCAGGGTCGACGATGA
Protein sequenceShow/hide protein sequence
MDELMVQVSQYRYMFDLLQPDQFVEFLYERSRHIADGSSFGQFDVDVTREYINWYRNITRLYITRPGAVRSNNSRLRDVADDPQQVQDIYNNNEWYMENIHYMYDVPIVP
APVQRRRVGQSSDFGTGYYNSEANPSSSNFEQGYHDLGTNPSSSYMHGHGCGRGEHNKYLYYEAPAAVPEHPDEQQQQENQEGLEQQRVQGRR