CuGenDBv2

Gene ID	PI0026916
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	chr01:28668551..28671412
RNA-Seq Expression	PI0026916
Synteny	PI0026916
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059416.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa]

8.6e-232

95.64

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS
        M EDT SLELEENHNAE DAN QSPAKKKKKSEKKKKRV  MNAKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQSHS+RARVYKH+NKPNRMQLVVS
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI
        LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+  YPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSS+FPTAESRRLS DKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_004141689.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus]

1.6e-225

93.81

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS
        M +DT S+ELEENH     A+ QSPAKKKKKSEKKKKRV  M+AKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQS S+RARVYKHKN+PNRMQLVVS
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEIS  YPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSS+FPTAESRRLS DKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_008462335.1 PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]

2.5e-231

95.41

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS
        M EDT SLE EENHNAE DAN QSPAKKKKKSEKKKKRV  MNAKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQSHS+RARVYKH+NKPNRMQLVVS
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI
        LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+  YPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSS+FPTAESRRLS DKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_023547949.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

4.8e-206

84.51

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSHSLRARVYKHKNKPNRMQL
        M EDT S ELE+NH +E D+NLQSPAKKKKKSEKKKKRVP +NAKIQVLSN PQKTPP+V YFPSGFDPHKD ++   E+  S+RARVY+HKNKPNRMQL
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSHSLRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ESPSV NEELSVQEKA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKL
        A+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A+IARNIP YN SATTP+EAYPLDKIILKGEWS+LEDLY  LQE AEIS  YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSS+FPT+E+RRLST+ INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_038896156.1 DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]

7.3e-223

92.2

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS
        M EDT SLELEENH AE D N +SPAKKKKKSEKKKKRVP +NAKIQVL N PQKTPP+VGYFPSGFDPHKDAD+EQ +S+RARVYKHKNKPNRMQLVVS
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKA+RMRELT LYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI
        LHALKQEDDP+TK DLD RMKNVVVN EALEGTQAEIARNIP YNASATTPQEAYPLDKIILKGEW+FLEDLYFRLQETAEIS NYP FVR+RIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSS+FPT+ESRR+ST+KINLLISHVLVLTLF DEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSL TLPIPLQFP+LRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCN4 Uncharacterized protein

7.6e-226

93.81

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS
        M +DT S+ELEENH     A+ QSPAKKKKKSEKKKKRV  M+AKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQS S+RARVYKHKN+PNRMQLVVS
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEIS  YPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSS+FPTAESRRLS DKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

1.2e-231

95.41

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS
        M EDT SLE EENHNAE DAN QSPAKKKKKSEKKKKRV  MNAKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQSHS+RARVYKH+NKPNRMQLVVS
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI
        LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+  YPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSS+FPTAESRRLS DKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

4.2e-232

95.64

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS
        M EDT SLELEENHNAE DAN QSPAKKKKKSEKKKKRV  MNAKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQSHS+RARVYKH+NKPNRMQLVVS
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI
        LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+  YPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSS+FPTAESRRLS DKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

1.9e-205

84.28

Show/hide

Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSHSLRARVYKHKNKPNRMQL
        M EDT S ELE+NH +E D+NLQSPAKKKKKSEKKKKRVP +NAKIQVLSN PQKTPP+V YFPSGFDPHKD ++   E+  S+RARVY+HKNKPNRMQL
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSHSLRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ESPSV NEELSVQEKA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKL
        A+KL +LKQEDDP+TK DLDG+MKNVVVNKEALE T A+IARNIP YN SATTP+EAYPLDKIILKGEWS+LEDLY  LQE AEIS  YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSS+FPT+E+RRLST+ INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

1.1e-205

84.51

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Query:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSHSLRARVYKHKNKPNRMQL
        M EDT S ELE+NH +E DAN QSPAKKKKKSEKKKKRVP +NAKIQVLSN PQKTPP+V YFPSGFDPHKDA++   E+  S+RARVY+HKNKPNRMQL
Subjt:  MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSHSLRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQEKA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKL
        A+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A+IARNIP YN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEIS  YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSS+FPT+E+RRLST+ INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

1.0e-09

25.79

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Query:  KKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYAL
        K K  K +         +++L       PP+V    SGF P ++         R ++ K  N+ NR   ++  T   V F   N   ++TA  +   Y L
Subjt:  KKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYAL

Query:  GVLDKATQSLKIVPIA-SNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDL-DGRMKNVVVN
         V DK  +  KIVP    N   R    ++  D    +     +  + ++++AN    L   +GT+KS+K   +  A + +   ET  D+ D  + NV   
Subjt:  GVLDKATQSLKIVPIA-SNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDL-DGRMKNVVVN

Query:  KEALEGTQAEIA------RNIPAYNASATTPQEAYPLDKIILKGEWS--FLEDLYFRLQET--AEISP-NYPSFVRNRIYKLQDIQDEEEKKKLCCIFSY
         EAL  TQ +IA      R IP  N  A + ++AY L+ II K E+S  +++ L     E   A++ P  +  F+  R  +L  I++ ++K+    I  Y
Subjt:  KEALEGTQAEIA------RNIPAYNASATTPQEAYPLDKIILKGEWS--FLEDLYFRLQET--AEISP-NYPSFVRNRIYKLQDIQDEEEKKKLCCIFSY

Query:  ITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSIFPTAE---SRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCK
        I+ L  +   + S+G+  + +      P +L       F       S ++S+ +++ +I ++LVL L  D +S+D   +A DL          F  +GC+
Subjt:  ITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSIFPTAE---SRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCK

Query:  FIR---------------KNNLSLATLPIPLQFPELRQKRRR
         +                  N   A L IPL+FP+ R+ R R
Subjt:  FIR---------------KNNLSLATLPIPLQFPELRQKRRR

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

7.1e-11

22.98

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Query:  PVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRG
        P V  F  G  P    +KE      +     KNK +R+ L      +N D +   Y  E    K +  YA+G+ DK T+ LKIVP     I  ++  V G
Subjt:  PVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRG

Query:  SDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAY
          ++ + S  ++ E     E+ +++++L   +G+K +KK+ QK+     E  D  +T   +D       V  E  +    E   ++P ++A     ++ Y
Subjt:  SDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAY

Query:  PLDKIILKGEWSFLEDLYFR--LQETAEISPNYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITH---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSI
         ++ I+    +  L    F   + +T+E     P + ++++ + +DI+DEE+    C + +++ +   L+K K  H    +      ++ + L   F S 
Subjt:  PLDKIILKGEWSFLEDLYFR--LQETAEISPNYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITH---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSI

Query:  FPTAESRRLSTDKINLLISHVLVLTLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT-LPIPLQFPELR
            +      DK+  + +++ +  L  ++F  +D   +A+ L  +      HF  +GCK +R  +   +  L  PL+ P+ R
Subjt:  FPTAESRRLSTDKINLLISHVLVLTLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT-LPIPLQFPELR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

1.9e-96

45.12

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Query:  ELEENHNAELDANLQSPAKKKKKSEKK--------KKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHK---DADKEQSHSLRARVYKHK-NKPNRMQ
        E  +  N E D N     +KK++  KK         +    +  K+  ++ +P +  P+V YF +G+DP K      K    + +  VYKHK +   R+Q
Subjt:  ELEENHNAELDANLQSPAKKKKKSEKK--------KKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHK---DADKEQSHSLRARVYKHK-NKPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSVQEKANRMRELTALYGTKKSK
        +VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  + +E E S S   +EL   +   R R     Y TKK+ 
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSVQEKANRMRELTALYGTKKSK

Query:  KQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRL-QETAEISPNYPSFVRNRI
         + +K  AL   DD  T+  LDG++  + VN  ALEGT + +ARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+ L QET   +  YP FVRNR+
Subjt:  KQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRL-QETAEISPNYPSFVRNRI

Query:  YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRT
        Y+L+DI+D+ +K+ +C   + +THL+K+KD++SM    SAK HK+P + RQKF+S+F  +ES R+  DKINLLIS+VLVL+L  D F +DP DIAKDLR 
Subjt:  YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRT

Query:  SPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRR
        S  +LR HF  LGCKF+++N+ ++ATLP PL FPE+ ++RR
Subjt:  SPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRR

Sequences

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CDS sequence

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ATGGGGGAAGACACGATATCTCTTGAATTAGAAGAAAACCATAACGCAGAACTAGACGCAAACTTACAGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAA
ACGAGTTCCACCAATGAATGCTAAAATCCAAGTTCTCAGCAACCAGCCCCAGAAAACTCCGCCGGTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTG
ACAAGGAACAGTCCCATTCTTTAAGGGCTAGGGTTTATAAGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGT
ACCAATTATTTGGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGACAAGGCCACCCAAAGCTTAAAGATAGTGCCTATTGCATCGAATAT
GATATTTAGATTAGACCCAAAAGTCAGAGGTTCGGACGTCTCTGAAAATGAATCCCCAAGTGTGGCAAATGAAGAGCTCTCTGTGCAGGAGAAAGCTAATAGAATGAGAG
AGCTCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGGCACAGAAGCTGCATGCACTGAAGCAAGAGGATGATCCTGAAACCAAGAACGATCTAGATGGGAGAATG
AAAAATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAGGCAGAGATTGCTCGTAATATACCAGCATATAATGCTTCTGCAACTACTCCACAAGAAGCTTACCCGCT
TGACAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTATTTCCGTTTGCAAGAAACAGCTGAAATAAGTCCTAATTATCCGTCCTTTGTTCGCAACAGAA
TTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAAAAGAAGCTCTGCTGCATATTTTCATATATCACTCATTTGATAAAGTATAAGGATCAGCATTCTATGGGTGAT
GTTTCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGCCAAAAGTTCTCATCCATTTTTCCGACTGCCGAGTCTAGAAGACTGTCAACAGATAAAATTAATCTTCT
CATTAGCCACGTTTTGGTGCTTACGCTATTTGCCGATGAATTCAGCAGCGATCCAGCAGACATAGCAAAGGATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTG
ATAATTTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGCTACACTTCCTATTCCCCTTCAATTTCCCGAGTTGAGGCAAAAGCGACGACGATAG

mRNA sequence

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Protein sequence

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MGEDTISLELEENHNAELDANLQSPAKKKKKSEKKKKRVPPMNAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSHSLRARVYKHKNKPNRMQLVVSPTGSNVDFVG
TNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRM
KNVVVNKEALEGTQAEIARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISPNYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGD
VSSAKGHKIPSMLRQKFSSIFPTAESRRLSTDKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

PI0026916 (gene) of Melon (PI 482460) v1 genome