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PI0026920 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026920
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionpentatricopeptide repeat-containing protein At1g10910, chloroplastic
Genome locationchr04:10058263..10058583
RNA-Seq ExpressionPI0026920
SyntenyPI0026920
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057187.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.8e-2691.67Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASASHAVPSLKNNQSNSVA LPKEPQ +PGSSN+KLFNG+QKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

XP_004141206.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis sativus]1.3e-2487.5Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASASHAV ++KNNQSNSVA LPKEPQ +PGSSNAKL NG+QKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

XP_008464969.1 PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis melo]1.8e-2691.67Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASASHAVPSLKNNQSNSVA LPKEPQ +PGSSN+KLFNG+QKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

XP_031738873.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X2 [Cucumis sativus]1.3e-2487.5Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASASHAV ++KNNQSNSVA LPKEPQ +PGSSNAKL NG+QKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

XP_031738874.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X3 [Cucumis sativus]1.3e-2487.5Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASASHAV ++KNNQSNSVA LPKEPQ +PGSSNAKL NG+QKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

TrEMBL top hitse value%identityAlignment
A0A0A0LI66 Uncharacterized protein6.1e-3686.02Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYIFAMCIWILNCGKSLAR
        MASASHAV ++KNNQSNSVA LPKEPQ +PGSSNAKL NG+QKRHSKSYLERQSAIAQVKDCSELAPALARFFFSY+FA C WILNCGKS A+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYIFAMCIWILNCGKSLAR

A0A1S3CN74 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X18.8e-2791.67Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASASHAVPSLKNNQSNSVA LPKEPQ +PGSSN+KLFNG+QKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

A0A5A7URC2 Pentatricopeptide repeat-containing protein8.8e-2791.67Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASASHAVPSLKNNQSNSVA LPKEPQ +PGSSN+KLFNG+QKRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

A0A6J1ERS3 pentatricopeptide repeat-containing protein At1g10910, chloroplastic2.7e-2075Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASA H+VP LKN++ NS+A LPK+PQ +P S N KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

A0A6J1IWQ9 pentatricopeptide repeat-containing protein At1g10910, chloroplastic6.1e-2073.61Show/hide
Query:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF
        MASA H+VP LKN++ NS+A +PK+PQ +P S N KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGCATCGCATGCTGTCCCCAGCCTCAAGAACAATCAATCTAATTCTGTCGCATTTCTCCCTAAAGAGCCTCAATCCGTTCCCGGCTCTTCAAATGCTAAACT
CTTCAATGGCTCCCAGAAGCGCCACTCCAAGTCATACCTTGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCTGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCT
TCTCTTACATTTTTGCTATGTGTATTTGGATTTTGAACTGTGGGAAATCACTTGCTCGTTCTTTTTTTACTTTGTTAGAAAGGCGTTTTCTTCTTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTGCATCGCATGCTGTCCCCAGCCTCAAGAACAATCAATCTAATTCTGTCGCATTTCTCCCTAAAGAGCCTCAATCCGTTCCCGGCTCTTCAAATGCTAAACT
CTTCAATGGCTCCCAGAAGCGCCACTCCAAGTCATACCTTGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCTGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCT
TCTCTTACATTTTTGCTATGTGTATTTGGATTTTGAACTGTGGGAAATCACTTGCTCGTTCTTTTTTTACTTTGTTAGAAAGGCGTTTTCTTCTTTGTTAA
Protein sequenceShow/hide protein sequence
MASASHAVPSLKNNQSNSVAFLPKEPQSVPGSSNAKLFNGSQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYIFAMCIWILNCGKSLARSFFTLLERRFLLC