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PI0026939 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026939
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:11884578..11885087
RNA-Seq ExpressionPI0026939
SyntenyPI0026939
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]9.9e-3751.15Show/hide
Query:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ
        + YVFGKDRATG  AE+FAD+  N P G++        DT+ P MYS GL+MS DD+M TR  R+SE R             +  + +I+R A+++ N+Q
Subjt:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ

Query:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
        L   IAEWP LQRQD   +R E+V  L+ IPEL+  DR  LMRILMRNV+DMKAFLEVPD +K  YC+ IL+EN
Subjt:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-3651.15Show/hide
Query:  MCYVFGKDRATGAHAETFADVELNMPGGFEG------NDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ
        + YVFGKDRATG  AE+FAD+  N P G++        DT+ P MYS GL+MS DD+M TR  R+SE R             +  + +I+R A+++ N+Q
Subjt:  MCYVFGKDRATGAHAETFADVELNMPGGFEG------NDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ

Query:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
        L   IAEWP LQRQD   +R E+V  L+ IPEL+  DR  LMRILMRNV+DMKAFLEVPD +K  YC+ IL+EN
Subjt:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-3751.15Show/hide
Query:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ
        + YVFGKDRATG  AE+FAD+  N P G++        DT+ P MYS GL+MS DD+M TR  R+SE R             +  + +I+R A+++ N+Q
Subjt:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ

Query:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
        L   IAEWP LQRQD   +R E+V  L+ IPEL+  DR  LMRILMRNV+DMKAFLEVPD +K  YC+ IL+EN
Subjt:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

KAA0057083.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-3751.15Show/hide
Query:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ
        + YVFGKDRATG  AE+FAD+  N P G++        DT+ P MYS GL+MS DD+M TR  R+SE R             +  + +I+R A+++ N+Q
Subjt:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ

Query:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
        L   IAEWP LQRQD   +R E+V  L+ IPEL+  DR  LMRILMRNV+DMKAFLEVPD +K  YC+ IL+EN
Subjt:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-3758.49Show/hide
Query:  ETFADVELNMPGGFE------GNDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQLKTAIAEWPNLQRQD
        ETF DV  N P G+E      GND EIPMMYSQG+DM  DDIMGTRP R +EGRT            ++ T+EIIRN M+ +ND+LK AI EW N+QRQD
Subjt:  ETFADVELNMPGGFE------GNDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQLKTAIAEWPNLQRQD

Query:  ERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
          A   EVV  LQ IPELS  DRV  M+ILM NV+DMKAFL++ DELKLDYCT I ++N
Subjt:  ERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

TrEMBL top hitse value%identityAlignment
A0A5A7UME4 Retrotransposon protein4.8e-3751.15Show/hide
Query:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ
        + YVFGKDRATG  AE+FAD+  N P G++        DT+ P MYS GL+MS DD+M TR  R+SE R             +  + +I+R A+++ N+Q
Subjt:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ

Query:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
        L   IAEWP LQRQD   +R E+V  L+ IPEL+  DR  LMRILMRNV+DMKAFLEVPD +K  YC+ IL+EN
Subjt:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

A0A5A7V469 Retrotransposon protein7.4e-3858.49Show/hide
Query:  ETFADVELNMPGGFE------GNDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQLKTAIAEWPNLQRQD
        ETF DV  N P G+E      GND EIPMMYSQG+DM  DDIMGTRP R +EGRT            ++ T+EIIRN M+ +ND+LK AI EW N+QRQD
Subjt:  ETFADVELNMPGGFE------GNDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQLKTAIAEWPNLQRQD

Query:  ERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
          A   EVV  LQ IPELS  DRV  M+ILM NV+DMKAFL++ DELKLDYCT I ++N
Subjt:  ERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

A0A5D3CBF7 Retrotransposon protein4.8e-3751.15Show/hide
Query:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ
        + YVFGKDRATG  AE+FAD+  N P G++        DT+ P MYS GL+MS DD+M TR  R+SE R             +  + +I+R A+++ N+Q
Subjt:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ

Query:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
        L   IAEWP LQRQD   +R E+V  L+ IPEL+  DR  LMRILMRNV+DMKAFLEVPD +K  YC+ IL+EN
Subjt:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

A0A5D3DPR5 Retrotransposon protein8.2e-3751.15Show/hide
Query:  MCYVFGKDRATGAHAETFADVELNMPGGFEG------NDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ
        + YVFGKDRATG  AE+FAD+  N P G++        DT+ P MYS GL+MS DD+M TR  R+SE R             +  + +I+R A+++ N+Q
Subjt:  MCYVFGKDRATGAHAETFADVELNMPGGFEG------NDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ

Query:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
        L   IAEWP LQRQD   +R E+V  L+ IPEL+  DR  LMRILMRNV+DMKAFLEVPD +K  YC+ IL+EN
Subjt:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

E5GCB5 Retrotransposon protein4.8e-3751.15Show/hide
Query:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ
        + YVFGKDRATG  AE+FAD+  N P G++        DT+ P MYS GL+MS DD+M TR  R+SE R             +  + +I+R A+++ N+Q
Subjt:  MCYVFGKDRATGAHAETFADVELNMPGGFEGN------DTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRT------------SLRTVEIIRNAMDFANDQ

Query:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN
        L   IAEWP LQRQD   +R E+V  L+ IPEL+  DR  LMRILMRNV+DMKAFLEVPD +K  YC+ IL+EN
Subjt:  LKTAIAEWPNLQRQDERASRAEVVSLLQGIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTACGTATTTGGGAAAGATCGTGCAACGGGAGCTCACGCAGAGACATTCGCTGATGTGGAGTTGAATATGCCTGGAGGGTTCGAGGGAAACGATACGGAGATCCC
TATGATGTATAGTCAGGGACTAGACATGTCGCTTGATGACATCATGGGCACACGACCCGGTCGCTTAAGTGAGGGTAGGACTAGTTTAAGAACTGTGGAAATCATTCGAA
ATGCAATGGATTTTGCCAATGACCAGCTGAAGACAGCCATTGCAGAGTGGCCAAATTTACAACGTCAAGATGAGCGCGCCTCTCGTGCAGAAGTTGTTAGCTTGTTGCAG
GGGATCCCTGAATTGAGTACCTGCGACAGGGTGCACCTTATGCGGATACTGATGCGCAATGTGAATGACATGAAAGCATTCTTAGAGGTACCCGATGAGCTTAAGTTGGA
CTATTGCACGACCATTCTCGAAGAGAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCTACGTATTTGGGAAAGATCGTGCAACGGGAGCTCACGCAGAGACATTCGCTGATGTGGAGTTGAATATGCCTGGAGGGTTCGAGGGAAACGATACGGAGATCCC
TATGATGTATAGTCAGGGACTAGACATGTCGCTTGATGACATCATGGGCACACGACCCGGTCGCTTAAGTGAGGGTAGGACTAGTTTAAGAACTGTGGAAATCATTCGAA
ATGCAATGGATTTTGCCAATGACCAGCTGAAGACAGCCATTGCAGAGTGGCCAAATTTACAACGTCAAGATGAGCGCGCCTCTCGTGCAGAAGTTGTTAGCTTGTTGCAG
GGGATCCCTGAATTGAGTACCTGCGACAGGGTGCACCTTATGCGGATACTGATGCGCAATGTGAATGACATGAAAGCATTCTTAGAGGTACCCGATGAGCTTAAGTTGGA
CTATTGCACGACCATTCTCGAAGAGAACGTTTGA
Protein sequenceShow/hide protein sequence
MCYVFGKDRATGAHAETFADVELNMPGGFEGNDTEIPMMYSQGLDMSLDDIMGTRPGRLSEGRTSLRTVEIIRNAMDFANDQLKTAIAEWPNLQRQDERASRAEVVSLLQ
GIPELSTCDRVHLMRILMRNVNDMKAFLEVPDELKLDYCTTILEENV