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PI0026965 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026965
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationchr04:15227054..15227935
RNA-Seq ExpressionPI0026965
SyntenyPI0026965
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035081.1 hypothetical protein E6C27_scaffold57G001500 [Cucumis melo var. makuwa]5.3e-0486.21Show/hide
Query:  AALTYADLRIIPFEQKFIVSSGLRLSYLG
        + LTY DLR+IPFEQKFIVSSGLRLSYLG
Subjt:  AALTYADLRIIPFEQKFIVSSGLRLSYLG
TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]8.7e-0784.62Show/hide
Query:  MGGLLGQRCRAALTYADLRIIPFEQKFIVSSGLRLSYLG
        MGGLLGQR RAALTYADLRI+  EQKFIVS GLR SYLG
Subjt:  MGGLLGQRCRAALTYADLRIIPFEQKFIVSSGLRLSYLG
TrEMBL top hitse value%identityAlignment
A0A5D3BX92 Uncharacterized protein2.5e-0486.21Show/hide
Query:  AALTYADLRIIPFEQKFIVSSGLRLSYLG
        + LTY DLR+IPFEQKFIVSSGLRLSYLG
Subjt:  AALTYADLRIIPFEQKFIVSSGLRLSYLG
A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass4.2e-0784.62Show/hide
Query:  MGGLLGQRCRAALTYADLRIIPFEQKFIVSSGLRLSYLG
        MGGLLGQR RAALTYADLRI+  EQKFIVS GLR SYLG
Subjt:  MGGLLGQRCRAALTYADLRIIPFEQKFIVSSGLRLSYLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGCTTATTGGGCCAGCGCTGTAGAGCAGCCCTCACCTATGCAGATCTAAGGATAATTCCGTTTGAACAGAAGTTCATAGTTAGCTCAGGATTAAGATTAAGTTA
CCTAGGTGTCGTCGAAGGATTCGCTTCGGATTTGTTGGGTTTGTTTTGGGCGCTTTGGAGACTTAGCGTTGGTTTCGGCAAGTGGCTTTGGGAGCTTAATTTCCTTTTTG
ATTGGGATTTTGGTTCGCTGGGACCTTTTCGGGTTGACTCGGTTAAGGTACGGGACTTCCTCTACCGGACTAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGCTTATTGGGCCAGCGCTGTAGAGCAGCCCTCACCTATGCAGATCTAAGGATAATTCCGTTTGAACAGAAGTTCATAGTTAGCTCAGGATTAAGATTAAGTTA
CCTAGGTGTCGTCGAAGGATTCGCTTCGGATTTGTTGGGTTTGTTTTGGGCGCTTTGGAGACTTAGCGTTGGTTTCGGCAAGTGGCTTTGGGAGCTTAATTTCCTTTTTG
ATTGGGATTTTGGTTCGCTGGGACCTTTTCGGGTTGACTCGGTTAAGGTACGGGACTTCCTCTACCGGACTAGCTAA
Protein sequenceShow/hide protein sequence
MGGLLGQRCRAALTYADLRIIPFEQKFIVSSGLRLSYLGVVEGFASDLLGLFWALWRLSVGFGKWLWELNFLFDWDFGSLGPFRVDSVKVRDFLYRTS